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MK069556.2__AZF88136.1__X__00031
Bact-VirMK069556.2__AZF88136.1__X__00031
Identity
- Accession:
- MK069556 ↗
- Kingdom:
- phage
Quality
88.7
mean pLDDT
Cluster
View cluster (26 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-159
Domain cluster:
rep: MH238466.1__AWY03247.1__X__00024__D19-153
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05069.19 best | Phage_tail_S | 62.0 | 8.30e-17 | 86.1% | 87.8% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.64 | 33.0 | 4.06e-01 | 97.5% | 78.4% |
| 1rzmA01 | 3.30.70.1140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 | 0.64 | 27.0 | 3.57e-01 | 91.8% | 71.2% |
| 1whyA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 28.0 | 3.94e-01 | 94.9% | 88.9% |
| 6n3dA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 31.0 | 4.01e-01 | 94.9% | 84.9% |
| 2l9wA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 28.0 | 3.34e-01 | 93.7% | 61.1% |
| 2m9kA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 28.0 | 3.52e-01 | 93.0% | 69.9% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 23.0 | 3.22e-01 | 99.4% | 69.6% |
| 2cxiA03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.59 | 27.0 | 3.77e-01 | 95.6% | 92.9% |
| 1tuwA00 | 3.30.70.1090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. | 0.58 | 31.0 | 3.65e-01 | 96.8% | 73.6% |
| 1x5oA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 28.0 | 3.59e-01 | 95.6% | 81.4% |
| 2yx1A01 | 3.30.70.2580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 23.0 | 3.30e-01 | 85.4% | 81.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3228723 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.60 | 33.0 | 3.82e-01 | 97.5% | 74.5% |
| 3439268 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.58 | 29.0 | 3.21e-01 | 94.9% | 56.2% |
| 3254339 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 26.0 | 3.58e-01 | 94.3% | 86.3% |
| 4023966 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.55 | 29.0 | 3.05e-01 | 95.6% | 54.3% |
| 3411220 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 28.0 | 2.91e-01 | 96.8% | 52.4% |