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MK069556.2__AZF88137.1__X__00032

Bact-Vir

MK069556.2__AZF88137.1__X__00032

Identity

Accession:
MK069556 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microcystis_phage_Me-ZS1

TaxID: 2483660

Cluster

View cluster (247 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-117
PDB
Domain cluster: rep: NC_073317.1__YP_010749072.1__QCF72_gp16__00016__D4-119
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.71 54.0 5.92e-01 98.9% 96.2%
4f4oC03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 49.0 5.13e-01 100.0% 86.5%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.64 51.0 4.17e-01 100.0% 46.3%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.64 50.0 4.14e-01 95.8% 47.6%
2kvoA01 2.40.30.220 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 0.62 52.0 5.07e-01 100.0% 83.7%
3mmhA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.62 44.0 3.70e-01 74.7% 78.4%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.62 43.0 3.92e-01 70.5% 96.8%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.61 42.0 3.87e-01 71.6% 97.6%
3a7rA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 47.0 3.51e-01 84.2% 49.6%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.59 53.0 5.35e-01 97.9% 94.7%
1golA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 43.0 3.88e-01 83.2% 56.2%
1krhA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 41.0 4.12e-01 88.4% 71.1%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.58 54.0 4.47e-01 100.0% 76.9%
1p0zA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 44.0 3.94e-01 81.1% 66.4%
4g3wA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 39.0 3.53e-01 74.7% 74.5%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 41.0 3.04e-01 83.2% 78.5%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.53 40.0 3.74e-01 85.3% 62.9%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 34.0 3.53e-01 77.9% 67.4%
2ausC02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.53 36.0 2.94e-01 91.6% 34.9%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 40.0 4.04e-01 100.0% 79.8%
3q0bX00 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.52 46.0 3.99e-01 100.0% 71.6%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 40.0 3.02e-01 83.2% 73.8%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.51 44.0 3.82e-01 100.0% 78.8%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 39.0 3.78e-01 91.6% 74.3%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 40.0 3.87e-01 97.9% 77.4%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 29.0 3.35e-01 84.2% 79.1%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4883825 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.73 61.0 6.25e-01 100.0% 92.4%
4031786 1.1.13.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.71 58.0 6.11e-01 97.9% 97.6%
4954563 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 57.0 6.07e-01 100.0% 96.5%
4141852 1.1.13.56 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.70 56.0 5.93e-01 100.0% 95.3%
3744064 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.69 46.0 4.75e-01 87.4% 72.2%
5003311 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 64.0 6.04e-01 100.0% 94.5%
4030357 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.68 46.0 4.73e-01 87.4% 73.3%
3973341 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 54.0 5.71e-01 96.8% 95.3%
3838081 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 48.0 4.96e-01 100.0% 78.9%
3981227 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 48.0 5.31e-01 97.9% 96.0%
3949274 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 61.0 5.68e-01 100.0% 85.2%
4879695 1.1.13.29 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_gp28 0.64 59.0 5.27e-01 100.0% 74.2%
5026244 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 44.0 4.53e-01 97.9% 75.6%
3789214 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.62 49.0 4.75e-01 100.0% 75.2%
3970827 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 50.0 5.32e-01 98.9% 96.5%
4032883 1.1.13.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.62 57.0 5.51e-01 100.0% 91.4%
4943219 205.1.1.123 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer2_BFD 0.61 44.0 3.75e-01 75.8% 81.9%
3972305 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.61 50.0 5.21e-01 98.9% 94.4%
4623906 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.60 47.0 3.49e-01 84.2% 49.2%
4259247 1.11.1.1 ↗ beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.60 48.0 4.81e-01 100.0% 83.8%
4373808 1.11.1.1 ↗ beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.60 51.0 4.91e-01 100.0% 80.9%
3966429 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.60 50.0 5.19e-01 98.9% 95.6%
4260208 1.1.13.62 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.60 55.0 5.34e-01 100.0% 100.0%
3503871 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 42.0 2.94e-01 84.2% 23.0%
3970830 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 50.0 4.97e-01 97.9% 86.0%
4938590 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 4.07e-01 86.3% 71.6%
3589778 1.1.5.78 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_TTP_1 0.58 51.0 4.29e-01 100.0% 82.9%
3944430 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.57 51.0 4.99e-01 96.8% 88.6%
5002750 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 51.0 4.97e-01 98.9% 93.3%
3390983 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 49.0 3.67e-01 100.0% 85.0%
3263964 304.54.1.0 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.55 38.0 4.32e-01 84.2% 97.1%
3966288 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.96e-01 85.3% 67.8%
4889790 3071.1.1.7 ↗ a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 0.55 49.0 4.02e-01 96.8% 95.2%
5079559 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.54 48.0 4.56e-01 100.0% 93.9%
1146564 11.1.1.183 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4426 0.53 40.0 3.78e-01 85.3% 65.0%
3261290 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.53 39.0 3.63e-01 85.3% 60.0%
4809346 1.1.13.57 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.53 42.0 4.41e-01 86.3% 100.0%
109 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 40.0 4.01e-01 100.0% 78.2%
3714246 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 41.0 2.78e-01 85.3% 26.7%
3972868 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.51 38.0 3.75e-01 100.0% 76.0%