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MK071653.1__AZF88248.1__X__00008
Bact-VirMK071653.1__AZF88248.1__X__00008
Identity
- Accession:
- MK071653 ↗
- Kingdom:
- phage
Quality
90.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-92
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.68 | 58.0 | 5.48e-01 | 100.0% | 77.8% |
| 5mz2I00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.66 | 56.0 | 4.90e-01 | 100.0% | 61.2% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.65 | 45.0 | 5.12e-01 | 91.2% | 100.0% |
| 3dc4A00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.63 | 57.0 | 3.97e-01 | 100.0% | 42.3% |
| 3l5iA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 47.0 | 4.82e-01 | 100.0% | 90.9% |
| 2cjsA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.58 | 42.0 | 3.57e-01 | 96.7% | 45.8% |
| 5hmaA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 36.0 | 3.72e-01 | 83.5% | 65.5% |
| 4hwnA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 43.0 | 4.47e-01 | 100.0% | 84.7% |
| 3cvzB01 | 3.30.1490.290 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 | 0.57 | 50.0 | 4.91e-01 | 100.0% | 90.9% |
| 1tdqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 4.74e-01 | 98.9% | 91.1% |
| 5k6wA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 45.0 | 4.61e-01 | 95.6% | 89.5% |
| 3wkmB01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.56 | 38.0 | 3.80e-01 | 96.7% | 67.0% |
| 3k0wA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 42.0 | 4.20e-01 | 98.9% | 78.3% |
| 4npjB01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.56 | 43.0 | 3.76e-01 | 100.0% | 54.3% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.56 | 33.0 | 4.05e-01 | 74.7% | 98.2% |
| 3o4lD01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 47.0 | 4.56e-01 | 100.0% | 81.7% |
| 5eliA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 49.0 | 4.63e-01 | 100.0% | 82.1% |
| 1bquA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 4.24e-01 | 100.0% | 79.0% |
| 3frmA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 41.0 | 3.01e-01 | 81.3% | 90.5% |
| 3bfoA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 41.0 | 4.30e-01 | 95.6% | 88.2% |
| 4m8rA01 | 2.60.40.3920 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 48.0 | 4.61e-01 | 100.0% | 86.4% |
| 2futA03 | 2.60.40.2750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 44.0 | 4.34e-01 | 86.8% | 89.6% |
| 3a7sA00 | 3.40.532.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase | 0.53 | 42.0 | 3.34e-01 | 87.9% | 84.3% |
| 5tipA02 | 2.70.9.20 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Major capsid protein Vp54 | 0.53 | 47.0 | 3.62e-01 | 98.9% | 86.0% |
| 3q0xA01 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.53 | 43.0 | 3.70e-01 | 90.1% | 96.1% |
| 1rypL00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 41.0 | 3.20e-01 | 84.6% | 86.3% |
| 4fx5A01 | 2.60.40.3670 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 48.0 | 4.13e-01 | 100.0% | 84.5% |
| 4v2bA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 46.0 | 4.36e-01 | 95.6% | 84.9% |
| 2y3vD00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.52 | 42.0 | 3.61e-01 | 90.1% | 98.7% |
| 4ecnA02 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.52 | 43.0 | 3.91e-01 | 100.0% | 67.2% |
| 3qt2A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 4.22e-01 | 97.8% | 84.5% |
| 3v6oB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 44.0 | 4.28e-01 | 100.0% | 87.0% |
| 4ckmB00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.51 | 40.0 | 3.53e-01 | 86.8% | 98.6% |
| 2yd1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 3.98e-01 | 98.9% | 80.4% |
| 1iruI00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 39.0 | 3.00e-01 | 83.5% | 81.8% |
| 6hj2A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.50 | 37.0 | 2.68e-01 | 76.9% | 45.3% |
| 3r5xD02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 39.0 | 3.36e-01 | 85.7% | 57.4% |
| 3eo4D00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 39.0 | 3.29e-01 | 84.6% | 77.2% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4659490 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.67 | 58.0 | 5.40e-01 | 98.9% | 74.8% |
| 4277361 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.65 | 59.0 | 5.03e-01 | 100.0% | 71.3% |
| 4930461 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 44.0 | 4.71e-01 | 100.0% | 85.0% |
| 3337910 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.60 | 50.0 | 4.88e-01 | 91.2% | 86.0% |
| 3521190 | 11.1.1.317 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR-1-like_Ig-like | 0.59 | 46.0 | 4.56e-01 | 100.0% | 78.9% |
| 5006740 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.59 | 35.0 | 3.33e-01 | 93.4% | 46.1% |
| 5058176 | 206.1.3.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N | 0.57 | 48.0 | 3.44e-01 | 94.5% | 68.7% |
| 3787053 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.56 | 41.0 | 3.62e-01 | 84.6% | 51.4% |
| 4973990 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.56 | 46.0 | 3.24e-01 | 93.4% | 70.2% |
| 5042324 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.55 | 31.0 | 3.12e-01 | 74.7% | 53.3% |
| 3499810 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.55 | 46.0 | 2.86e-01 | 94.5% | 25.8% |
| 3827274 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.54 | 42.0 | 3.77e-01 | 100.0% | 59.2% |
| 3591321 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.54 | 43.0 | 3.76e-01 | 100.0% | 55.9% |
| 3629263 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.53 | 41.0 | 3.22e-01 | 83.5% | 93.5% |
| 1186 | 10.2.1.41 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV | 0.53 | 47.0 | 3.61e-01 | 100.0% | 87.0% |
| 3499545 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.53 | 44.0 | 3.95e-01 | 100.0% | 64.6% |
| 4932473 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.52 | 45.0 | 3.32e-01 | 94.5% | 80.9% |
| 3387883 | 206.1.3.36 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_TupA | 0.52 | 43.0 | 3.02e-01 | 92.3% | 56.5% |
| 4863942 | 10.2.1.41 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV | 0.52 | 46.0 | 3.86e-01 | 100.0% | 85.5% |
| 3513468 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.52 | 40.0 | 3.10e-01 | 83.5% | 93.5% |
| 3285997 | 1.1.7.27 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF1905 | 0.51 | 42.0 | 4.20e-01 | 89.0% | 95.7% |
| 3242790 | 206.1.3.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N | 0.51 | 42.0 | 3.01e-01 | 93.4% | 78.6% |
| 4967149 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.51 | 44.0 | 2.99e-01 | 95.6% | 43.0% |
| 5023429 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.51 | 46.0 | 3.31e-01 | 100.0% | 43.5% |
| 4944239 | 301.13.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain | 0.51 | 35.0 | 3.15e-01 | 71.4% | 77.7% |
| 5041479 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.50 | 45.0 | 3.53e-01 | 98.9% | 58.4% |
| 5015366 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.50 | 45.0 | 3.53e-01 | 98.9% | 59.5% |
| 4947326 | 4020.1.1.1 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 | 0.50 | 39.0 | 3.56e-01 | 100.0% | 62.5% |
| None | — | 0.50 | 46.0 | 3.52e-01 | 100.0% | 58.5% | |
| 4970236 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.50 | 41.0 | 3.48e-01 | 91.2% | 79.4% |
| 3598757 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.50 | 44.0 | 3.84e-01 | 100.0% | 64.1% |
| 4942749 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.50 | 45.0 | 3.52e-01 | 100.0% | 60.5% |
| 6786 | 228.1.1.1 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C | 0.50 | 37.0 | 3.50e-01 | 80.2% | 84.3% |