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MK071653.1__AZF88266.1__X__00026

Bact-Vir

MK071653.1__AZF88266.1__X__00026

Identity

Accession:
MK071653 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-67
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.90 85.0 6.55e-01 100.0% 61.1%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.89 70.0 5.25e-01 81.8% 40.8%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.88 81.0 5.57e-01 100.0% 39.0%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.84 76.0 5.71e-01 100.0% 56.8%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.83 76.0 5.54e-01 100.0% 39.4%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.83 76.0 5.89e-01 100.0% 60.0%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.81 73.0 4.63e-01 100.0% 43.8%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.80 72.0 4.77e-01 100.0% 31.0%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.80 73.0 5.38e-01 100.0% 42.2%
4pn0C00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.79 63.0 4.13e-01 84.8% 44.1%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.79 59.0 4.92e-01 78.8% 47.7%
2vtwA00 2.60.90.30 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain 0.79 62.0 4.33e-01 84.8% 94.6%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.78 70.0 4.67e-01 100.0% 34.4%
4ckbD02 3.20.100.20 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › 0.77 61.0 4.24e-01 84.8% 68.3%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.77 59.0 4.78e-01 86.4% 44.6%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.77 58.0 4.40e-01 100.0% 34.4%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.76 61.0 5.31e-01 86.4% 65.0%
1pu4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.76 67.0 4.07e-01 98.5% 21.9%
3rwxA02 2.40.128.350 Mainly Beta › Beta Barrel › Lipocalin › 0.75 67.0 5.26e-01 98.5% 50.0%
1n9eA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.74 66.0 3.88e-01 100.0% 35.0%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.73 63.0 5.37e-01 100.0% 59.4%
2kdyA01 2.60.40.1980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.73 64.0 4.99e-01 100.0% 63.4%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 54.0 5.25e-01 80.3% 70.7%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.72 53.0 4.78e-01 80.3% 56.5%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.72 64.0 4.69e-01 100.0% 38.3%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.72 57.0 4.68e-01 86.4% 54.2%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.71 55.0 5.80e-01 84.8% 93.2%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.70 57.0 4.56e-01 100.0% 43.7%
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.69 63.0 5.38e-01 100.0% 64.4%
1swgC00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.69 59.0 4.90e-01 100.0% 61.9%
1v7wA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.67 60.0 3.88e-01 100.0% 61.9%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.67 53.0 3.80e-01 86.4% 98.0%
1yq2A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.66 58.0 3.78e-01 100.0% 70.3%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.66 51.0 5.25e-01 83.3% 92.1%
2lrgA00 2.60.60.60 Mainly Beta › Sandwich › Lipoxygenase-1 › 0.65 46.0 3.73e-01 74.2% 88.1%
7dd9A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.63 54.0 3.68e-01 100.0% 63.0%
3g8yA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 53.0 3.34e-01 98.5% 38.6%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.62 50.0 4.16e-01 90.9% 76.2%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 53.0 4.21e-01 100.0% 54.2%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.62 52.0 4.18e-01 97.0% 54.7%
1xuvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 50.0 3.86e-01 100.0% 38.7%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.61 53.0 4.12e-01 100.0% 46.7%
1aq3A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.60 53.0 4.29e-01 100.0% 62.8%
3ua3A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.60 50.0 3.69e-01 100.0% 96.6%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 48.0 3.14e-01 95.5% 38.0%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.59 51.0 3.78e-01 100.0% 36.3%
2joxA00 2.60.40.4240 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill 0.57 50.0 4.29e-01 98.5% 76.4%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 49.0 3.42e-01 98.5% 41.0%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 42.0 3.46e-01 84.8% 41.0%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.55 48.0 3.95e-01 98.5% 85.0%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 46.0 3.17e-01 95.5% 39.6%
1qxyA00 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.53 43.0 2.93e-01 89.4% 74.3%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.53 43.0 3.64e-01 97.0% 68.5%
6ya6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 46.0 4.08e-01 100.0% 71.4%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.52 45.0 3.86e-01 98.5% 88.3%
1wuoA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 44.0 3.14e-01 98.5% 42.0%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.51 43.0 4.03e-01 100.0% 77.4%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3975988 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.83 75.0 4.93e-01 100.0% 28.8%
3983528 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.82 76.0 5.00e-01 100.0% 32.7%
4603160 5084.5.4.4 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › YaiO 0.80 73.0 4.90e-01 100.0% 29.8%
3273993 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.78 72.0 4.73e-01 100.0% 31.0%
3976326 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.78 70.0 5.10e-01 100.0% 43.3%
3069457 1053.1.1.0 beta barrels › Factor H-binding protein (fHbp) N-terminal beta-barrel domain › Factor H-binding protein (fHbp) N-terminal beta-barrel domain › Factor H-binding protein (fHbp) N-terminal beta-barrel domain 0.77 62.0 6.69e-01 84.8% 98.2%
1406770 868.1.1.2 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase 0.77 61.0 4.01e-01 84.8% 43.7%
146366 5084.7.1.1 beta barrels › Outer membrane meander beta-barrels › Hypothetical bacterial outer membrane protein (BF2706) › Hypothetical bacterial outer membrane protein (BF2706) › Calycin_like 0.75 68.0 5.33e-01 100.0% 49.6%
3952882 331.3.1.27 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.73 66.0 4.85e-01 100.0% 49.4%
3438237 12.3.1.2 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid 0.73 66.0 4.40e-01 100.0% 74.7%
3567279 243.3.1.4 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Latexin_N 0.73 58.0 4.81e-01 87.9% 49.6%
3281686 331.3.1.27 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.73 63.0 4.76e-01 98.5% 50.3%
4009987 5084.8.1.0 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore 0.72 66.0 3.98e-01 100.0% 18.3%
4196334 5084.10.1.1 beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.72 64.0 3.72e-01 98.5% 16.9%
5007185 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.71 64.0 4.95e-01 100.0% 51.0%
4028624 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.71 64.0 4.12e-01 98.5% 69.3%
3604240 71.1.1.25 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF6612 0.71 63.0 4.42e-01 100.0% 50.0%
3293131 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.71 61.0 4.21e-01 100.0% 30.6%
3827592 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.71 62.0 4.61e-01 100.0% 39.9%
3500606 868.1.1.3 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.70 55.0 3.99e-01 84.8% 61.6%
3194607 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.69 63.0 3.76e-01 100.0% 26.3%
2029638 71.2.1.2 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › EipB_like 0.69 62.0 4.18e-01 100.0% 37.2%
4969785 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.68 48.0 3.34e-01 84.8% 22.8%
4050883 247.1.1.30 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 0.68 58.0 3.71e-01 93.9% 46.8%
3220160 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 53.0 4.14e-01 84.8% 50.0%
3489236 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.67 54.0 4.64e-01 89.4% 69.5%
5057921 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.65 56.0 3.87e-01 100.0% 77.8%
3801224 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 54.0 4.37e-01 93.9% 48.4%
5020831 881.4.1.2 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 0.64 53.0 4.28e-01 90.9% 88.8%
3242315 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.64 46.0 4.98e-01 84.8% 90.9%
4955671 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.63 47.0 4.50e-01 81.8% 70.0%
3829563 897.1.1.0 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.63 51.0 3.96e-01 100.0% 38.2%
3228242 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.63 44.0 3.89e-01 81.8% 49.0%
4556738 7503.1.1.1 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.63 54.0 3.69e-01 97.0% 62.7%
4944259 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.62 52.0 3.66e-01 100.0% 69.8%
3288524 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.61 48.0 3.33e-01 86.4% 25.2%
3984778 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.61 52.0 3.69e-01 100.0% 29.4%
4024177 1116.1.1.0 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.61 47.0 3.42e-01 83.3% 74.4%
4214272 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.60 52.0 3.49e-01 97.0% 63.1%
5009522 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 3.14e-01 97.0% 17.2%
6518 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.60 53.0 4.27e-01 100.0% 62.8%
4466226 5087.1.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell 0.60 49.0 4.34e-01 95.5% 68.6%
3428522 331.3.1.43 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.60 52.0 3.57e-01 100.0% 37.1%
165299 375.1.1.34 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Churchill 0.57 50.0 4.29e-01 98.5% 76.4%
3272624 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.55 49.0 3.96e-01 100.0% 54.6%
3924939 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.55 47.0 3.94e-01 97.0% 57.4%