Back to structures

MK071653.1__AZF88293.1__X__00053

Bact-Vir

MK071653.1__AZF88293.1__X__00053

Identity

Accession:
MK071653 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-160
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17289.9 best Terminase_6C 31.9 1.70e-07 96.7% 97.4%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.89 85.0 7.77e-01 99.3% 81.5%
8dkrB01 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.88 82.0 6.97e-01 96.7% 90.8%
4ifeA02 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.88 82.0 7.02e-01 97.4% 87.7%
3c6aA00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.84 81.0 7.32e-01 100.0% 79.8%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.76 71.0 6.74e-01 99.3% 86.0%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.70 57.0 6.11e-01 99.3% 97.7%
4a2bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 58.0 6.10e-01 99.3% 97.8%
1iv0A00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.64 40.0 4.92e-01 82.4% 98.0%
5ybwA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 31.0 3.77e-01 100.0% 70.4%
3wuhB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 55.0 5.27e-01 100.0% 82.9%
3ouzA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 31.0 3.89e-01 99.3% 83.0%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 42.0 4.29e-01 74.5% 73.2%
2zsgA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.57 41.0 4.50e-01 85.6% 88.3%
2dstA00 3.40.50.12270 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 37.0 4.05e-01 100.0% 80.3%
3gdwB00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.57 41.0 4.30e-01 100.0% 81.9%
1j0aA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 34.0 4.01e-01 76.5% 88.5%
2fcjB00 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.55 40.0 4.45e-01 84.3% 97.5%
1izcA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.55 40.0 3.27e-01 75.8% 90.0%
4ap5A02 3.40.50.11350 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 40.0 3.83e-01 96.7% 66.3%
7u35A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 32.0 3.93e-01 92.8% 95.7%
4isbA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 45.0 3.28e-01 89.5% 46.8%
3rkrA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 40.0 3.50e-01 77.1% 74.2%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 50.0 4.66e-01 100.0% 84.2%
2bfwA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 39.0 3.67e-01 76.5% 61.9%
4nesA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 41.0 4.02e-01 91.5% 74.2%
3lteD00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 38.0 4.20e-01 100.0% 94.3%
5icsF00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 39.0 3.29e-01 77.8% 63.0%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 47.0 4.12e-01 99.3% 79.6%
3qz6A00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.51 38.0 3.26e-01 77.1% 93.8%
5itwA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 46.0 3.91e-01 100.0% 90.6%
6xehA01 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 36.0 4.07e-01 98.7% 100.0%
2zg6B01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.51 35.0 3.74e-01 75.2% 82.3%
4rgbA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 46.0 3.77e-01 100.0% 92.0%
2rhcA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 45.0 3.84e-01 100.0% 90.7%
4lvuA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 46.0 3.87e-01 100.0% 87.7%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5083931 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.94 92.0 8.69e-01 100.0% 88.6%
5031052 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.94 90.0 7.96e-01 99.3% 80.0%
5031041 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.93 90.0 8.12e-01 100.0% 81.0%
5041440 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.93 89.0 7.84e-01 100.0% 86.7%
3946809 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.91 87.0 7.69e-01 99.3% 81.0%
4988089 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.90 87.0 7.92e-01 99.3% 86.3%
4929631 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.90 84.0 7.87e-01 100.0% 82.2%
4010072 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.88 83.0 6.98e-01 100.0% 82.5%
3947877 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.86 81.0 7.22e-01 100.0% 88.6%
1949055 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.86 82.0 7.56e-01 100.0% 82.1%
4031863 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.85 80.0 6.88e-01 100.0% 84.8%
5002634 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.85 79.0 7.40e-01 99.3% 82.2%
3587035 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.85 79.0 7.06e-01 100.0% 88.6%
4033330 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.84 79.0 6.96e-01 100.0% 86.5%
4975081 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 74.0 7.42e-01 96.1% 90.3%
4995715 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 79.0 6.51e-01 100.0% 78.0%
2755869 2484.1.1.86 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease 0.83 78.0 6.79e-01 99.3% 84.2%
4972936 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.83 73.0 7.42e-01 99.3% 94.0%
4972935 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.82 78.0 7.36e-01 100.0% 85.6%
4975080 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.81 77.0 7.19e-01 100.0% 84.3%
3982042 2484.1.1.144 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.80 57.0 6.12e-01 100.0% 85.4%
4524082 2484.1.1.76 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C 0.78 73.0 6.76e-01 99.3% 81.1%
4034552 2484.1.1.76 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C 0.77 73.0 6.92e-01 100.0% 86.9%
134144 2484.1.1.76 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C 0.76 71.0 6.74e-01 99.3% 86.0%
3964959 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 71.0 6.66e-01 100.0% 85.4%
4933350 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 55.0 5.99e-01 100.0% 91.4%
4558199 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.73 55.0 5.65e-01 100.0% 81.4%
4256383 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.72 56.0 5.71e-01 100.0% 82.0%
4600425 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.72 60.0 6.06e-01 100.0% 86.5%
5023939 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 46.0 5.35e-01 99.3% 90.9%
3598526 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.69 51.0 4.28e-01 77.1% 94.6%
2623870 2484.1.1.44 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pox_A22 0.68 62.0 6.27e-01 100.0% 98.0%
4308615 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.68 57.0 6.03e-01 100.0% 99.3%
4602919 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.66 56.0 5.71e-01 100.0% 91.3%
4118739 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.64 55.0 5.69e-01 100.0% 95.9%
3300528 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 47.0 3.36e-01 76.5% 87.4%
3953212 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.63 51.0 5.39e-01 100.0% 95.6%
3312424 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.62 51.0 3.71e-01 85.6% 99.0%
3364681 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 51.0 3.70e-01 88.2% 95.8%
4928272 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.60 43.0 4.31e-01 73.9% 71.9%
3677504 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.59 41.0 4.50e-01 81.7% 87.2%
4618618 2002.1.1.15 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA 0.58 42.0 3.54e-01 73.9% 78.4%
3376135 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.58 48.0 3.50e-01 88.9% 84.8%
5017705 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 41.0 3.32e-01 76.5% 62.9%
5060988 7564.1.1.0 a/b three-layered sandwiches › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD › Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 0.55 39.0 3.91e-01 96.1% 71.0%
3444325 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.55 44.0 4.10e-01 83.7% 92.4%
3434427 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 47.0 3.29e-01 91.5% 92.6%
3675008 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.54 43.0 4.20e-01 83.7% 92.9%
3335943 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 47.0 3.26e-01 94.1% 82.2%
3457030 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.54 43.0 3.92e-01 84.3% 84.5%
3357725 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 47.0 3.40e-01 94.1% 97.6%
3311061 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 49.0 4.21e-01 99.3% 85.5%
3839412 7512.1.1.7 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_9 0.53 39.0 3.76e-01 75.8% 68.0%
3456049 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.53 39.0 4.20e-01 96.7% 88.1%
4218529 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.53 39.0 3.12e-01 77.8% 52.1%
3306835 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.52 46.0 3.48e-01 96.1% 95.0%
5019289 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 43.0 3.94e-01 89.5% 98.0%
3327232 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.52 47.0 3.77e-01 100.0% 90.2%
3677519 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.52 45.0 3.95e-01 94.8% 96.5%
3649875 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 44.0 3.59e-01 94.1% 71.2%
3343696 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 46.0 3.40e-01 100.0% 92.3%
4256358 2003.1.1.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.50 46.0 3.87e-01 100.0% 91.7%
4611204 2004.1.1.105 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase 0.50 36.0 4.00e-01 88.2% 97.4%
3348776 2484.1.1.106 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.50 43.0 3.12e-01 92.2% 94.5%
5035312 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 31.0 3.62e-01 95.4% 88.6%