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MK075002.1__AZB66556.1__X__00012

Bact-Vir

MK075002.1__AZB66556.1__X__00012

Identity

Accession:
MK075002 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 39-88
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u2sC00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.68 42.0 3.50e-01 90.0% 34.4%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.66 53.0 4.02e-01 96.0% 36.9%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.64 51.0 5.01e-01 92.0% 83.0%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 50.0 3.98e-01 92.0% 43.6%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 47.0 3.44e-01 90.0% 29.9%
2vzsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 51.0 4.06e-01 96.0% 61.8%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.61 46.0 3.54e-01 96.0% 32.6%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 44.0 3.93e-01 92.0% 52.7%
1wpuA00 3.40.1510.10 Alpha Beta › 3-Layer(aba) Sandwich › Hut operon positive regulatory protein HutP › Hut operon regulatory protein HutP 0.61 51.0 3.72e-01 96.0% 71.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.48e-01 90.0% 69.8%
4e0aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 48.0 3.52e-01 94.0% 36.5%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 46.0 3.80e-01 94.0% 43.0%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 47.0 3.87e-01 92.0% 46.5%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 49.0 3.16e-01 100.0% 54.7%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 3.66e-01 90.0% 42.7%
3abiA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 50.0 3.42e-01 96.0% 86.4%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 40.0 2.99e-01 88.0% 27.7%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 48.0 3.12e-01 96.0% 24.6%
3if8B03 6.20.270.10 Special › Other non-globular › Carboxypeptidase Inhibitor; Chain A › 0.58 45.0 4.23e-01 90.0% 70.0%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 47.0 3.60e-01 90.0% 52.9%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 45.0 3.41e-01 90.0% 33.3%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.58 43.0 3.10e-01 92.0% 26.0%
6fgjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 44.0 3.31e-01 92.0% 30.7%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 40.0 3.12e-01 94.0% 29.8%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 39.0 2.98e-01 94.0% 27.2%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 39.0 3.27e-01 92.0% 37.5%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.57 47.0 3.41e-01 96.0% 34.6%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.57 39.0 3.97e-01 92.0% 77.1%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 39.0 3.14e-01 92.0% 34.3%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 45.0 3.72e-01 92.0% 55.8%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 40.0 2.63e-01 78.0% 42.2%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 41.0 3.31e-01 90.0% 40.8%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 3.33e-01 90.0% 42.9%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.52e-01 92.0% 45.6%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.54 38.0 2.97e-01 88.0% 33.9%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 38.0 2.87e-01 92.0% 27.9%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.54 45.0 3.08e-01 96.0% 42.4%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 41.0 3.44e-01 96.0% 45.1%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.00e-01 90.0% 35.5%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 39.0 3.13e-01 88.0% 36.8%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 41.0 3.07e-01 92.0% 87.6%
3irbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.48e-01 86.0% 57.4%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 41.0 2.68e-01 100.0% 33.6%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.66e-01 100.0% 18.4%
2w3sB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 43.0 2.92e-01 100.0% 66.7%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 37.0 3.00e-01 96.0% 36.1%
2yz0A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.50 41.0 3.18e-01 100.0% 61.6%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024738 220.1.1.243 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF30062 0.70 56.0 4.43e-01 92.0% 41.9%
3286469 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.68 59.0 4.04e-01 98.0% 32.6%
3488617 395.1.1.0 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related 0.68 50.0 5.20e-01 90.0% 88.9%
3926482 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.66 55.0 3.42e-01 92.0% 16.6%
3451025 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.65 52.0 4.29e-01 92.0% 60.0%
3393619 284.4.1.2 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › PF28923 0.64 46.0 4.62e-01 94.0% 76.0%
3230100 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 49.0 4.78e-01 92.0% 76.4%
3604270 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.63 51.0 3.85e-01 92.0% 36.9%
3534592 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 49.0 4.83e-01 96.0% 80.0%
3996695 3256.1.1.0 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.63 48.0 4.72e-01 92.0% 76.4%
3925989 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.63 49.0 3.73e-01 92.0% 35.2%
5013672 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 50.0 4.59e-01 92.0% 67.7%
3222710 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 50.0 4.34e-01 90.0% 60.3%
3789933 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.62 53.0 4.24e-01 100.0% 82.9%
3218749 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.62 39.0 3.76e-01 70.0% 53.3%
5048982 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 44.0 2.91e-01 78.0% 48.1%
3930653 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.62 47.0 3.94e-01 90.0% 47.8%
3931897 69.1.2.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › AXH › AXH 0.61 45.0 3.44e-01 88.0% 32.8%
3602665 832.1.1.1 a+b three layers › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 › eRF1_1 0.61 49.0 3.60e-01 92.0% 64.3%
4679671 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.61 47.0 3.59e-01 90.0% 36.4%
3617004 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 3.79e-01 92.0% 39.1%
3925915 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.61 47.0 4.75e-01 92.0% 84.0%
2388815 5.1.4.292 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CAF1C_H4-bd, Beta-prop_EIPR1 0.60 44.0 3.77e-01 88.0% 48.2%
4029815 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 42.0 3.21e-01 94.0% 29.2%
3693249 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.60 45.0 3.45e-01 90.0% 33.1%
5022323 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.40e-01 90.0% 95.4%
4330094 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 45.0 3.83e-01 96.0% 46.7%
3251381 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.60 47.0 4.39e-01 90.0% 70.8%
3728712 109.4.1.681 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.60 47.0 2.71e-01 88.0% 9.9%
3565104 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 52.0 2.84e-01 100.0% 59.2%
4883064 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.59 47.0 3.05e-01 92.0% 18.5%
3483729 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 42.0 3.33e-01 90.0% 32.5%
3824181 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.59 46.0 4.43e-01 90.0% 75.0%
5056410 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.58 49.0 3.07e-01 100.0% 81.0%
1949 4081.1.1.1 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › P35 0.58 46.0 2.92e-01 94.0% 54.2%
3647427 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.57 49.0 3.70e-01 100.0% 43.1%
4984061 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.57 49.0 3.06e-01 100.0% 87.5%
3396462 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 47.0 4.35e-01 92.0% 70.8%
5031616 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.56 43.0 4.23e-01 96.0% 78.2%
3811535 331.3.1.28 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.56 46.0 3.50e-01 94.0% 44.8%
3982478 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 43.0 3.23e-01 96.0% 33.3%
3819309 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.55 43.0 3.73e-01 92.0% 55.3%
3925865 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 41.0 3.20e-01 88.0% 35.0%
4506892 223.1.1.44 a+b three layers › Profilin-like › sensor domains › sensor domains › Per3-like_PAS-A 0.54 45.0 3.46e-01 96.0% 50.0%
3301984 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 41.0 4.08e-01 96.0% 85.5%
2494924 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.54 42.0 3.71e-01 90.0% 56.4%
5846 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.54 43.0 3.23e-01 96.0% 33.6%
3735106 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 40.0 2.50e-01 92.0% 20.2%
4956937 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.54 44.0 2.75e-01 100.0% 87.1%
3710518 10.13.1.1 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.53 41.0 2.84e-01 92.0% 23.2%
3465939 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.53 42.0 2.59e-01 96.0% 12.9%
3497397 395.1.1.0 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related 0.53 40.0 3.63e-01 96.0% 58.7%
2576212 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 40.0 3.12e-01 92.0% 35.9%
3517350 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.53 42.0 2.59e-01 90.0% 13.8%
3827309 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.52 36.0 3.16e-01 96.0% 43.3%
3595817 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 3.31e-01 92.0% 74.5%
3214289 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 41.0 3.21e-01 90.0% 40.0%
3803688 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.51 42.0 3.08e-01 96.0% 92.3%
3236475 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.51 39.0 2.99e-01 88.0% 32.6%
3801626 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 41.0 3.25e-01 92.0% 50.0%
3510355 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.50 40.0 3.25e-01 100.0% 78.3%
3927710 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.50 37.0 2.75e-01 88.0% 27.3%