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MK075005.1__AZB66749.1__X__00003

Bact-Vir

MK075005.1__AZB66749.1__X__00003

Identity

Accession:
MK075005 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Triavirus› Staphylococcus_phage_phiSP119-2

TaxID: 2491317

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-74
PDB
Domain cluster: rep: IMGVR_UViG_3300001682_000662-3300001682-SAHD_1000721816__D1-69
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7wvzA03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.68 51.0 3.44e-01 81.2% 75.6%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.68 51.0 3.42e-01 81.2% 75.1%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.66 39.0 3.17e-01 100.0% 30.3%
4emiA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.65 56.0 5.09e-01 100.0% 71.4%
3el6A00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.64 48.0 3.25e-01 81.2% 74.2%
1ojtA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.63 56.0 4.63e-01 98.6% 68.0%
4b1bA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 56.0 3.44e-01 100.0% 16.7%
4gakA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 47.0 3.26e-01 82.6% 76.0%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 38.0 3.22e-01 100.0% 36.4%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 48.0 3.76e-01 87.0% 80.5%
2v3aA03 3.30.390.120 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.60 47.0 4.84e-01 97.1% 95.3%
3ddvB01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.59 44.0 3.60e-01 82.6% 74.5%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.58 46.0 3.99e-01 87.0% 75.0%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.58 43.0 3.48e-01 81.2% 89.2%
7qs4A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.58 41.0 3.08e-01 75.4% 38.5%
3kljA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.57 44.0 4.20e-01 98.6% 71.1%
2essA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 42.0 3.83e-01 81.2% 71.7%
3khpD01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 45.0 3.69e-01 89.9% 62.5%
5bp3B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.57 44.0 2.93e-01 84.1% 25.5%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.56 49.0 3.50e-01 100.0% 59.7%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.10e-01 100.0% 22.9%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 44.0 3.38e-01 88.4% 76.3%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.55 30.0 2.96e-01 94.2% 45.5%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.87e-01 85.5% 65.5%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.54 38.0 3.64e-01 78.3% 62.2%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 37.0 2.98e-01 72.5% 48.9%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 41.0 3.40e-01 87.0% 81.7%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.28e-01 85.5% 40.4%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 4.21e-01 100.0% 93.5%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.88e-01 98.6% 93.1%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 3.32e-01 100.0% 77.3%
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 39.0 2.78e-01 84.1% 64.1%
3s9dD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.96e-01 100.0% 71.9%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.33e-01 76.8% 81.1%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 3.07e-01 75.4% 71.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3282860 3380.1.1.0 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 0.72 57.0 5.44e-01 89.9% 73.8%
3794632 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.70 40.0 3.11e-01 100.0% 26.4%
4966292 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.70 61.0 6.32e-01 97.1% 100.0%
4548669 244.2.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding 0.70 59.0 5.79e-01 100.0% 85.3%
3504843 244.2.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding 0.69 59.0 5.89e-01 100.0% 90.0%
3931349 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.69 47.0 3.65e-01 71.0% 79.1%
5064100 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.68 58.0 5.37e-01 98.6% 73.3%
4538067 244.2.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding 0.68 53.0 5.57e-01 100.0% 96.7%
3940526 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.67 56.0 5.30e-01 98.6% 77.5%
3407363 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.67 39.0 3.08e-01 100.0% 27.6%
5059423 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.66 54.0 4.98e-01 100.0% 70.0%
2712668 244.2.1.5 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Reductase_C 0.64 58.0 5.27e-01 100.0% 92.3%
3279316 244.2.1.5 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Reductase_C 0.64 48.0 4.70e-01 100.0% 74.7%
3895754 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 47.0 4.02e-01 100.0% 47.8%
3701504 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 51.0 3.85e-01 87.0% 95.8%
3576362 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 58.0 5.04e-01 100.0% 80.0%
3781849 247.1.1.38 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.62 50.0 4.60e-01 88.4% 88.9%
3498371 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 54.0 3.30e-01 98.6% 24.2%
3272801 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.62 55.0 3.46e-01 100.0% 40.3%
3996654 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 38.0 3.27e-01 100.0% 39.1%
5084049 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 48.0 3.95e-01 85.5% 98.4%
3536857 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.60 53.0 4.01e-01 98.6% 72.7%
4979907 244.2.1.7 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rubredoxin_C 0.60 49.0 4.40e-01 100.0% 64.3%
3734856 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 44.0 3.66e-01 82.6% 48.5%
4888772 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.58 41.0 2.74e-01 73.9% 48.4%
3596051 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 49.0 4.37e-01 100.0% 94.3%
5051779 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 43.0 3.70e-01 79.7% 90.9%
3939380 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 41.0 4.04e-01 81.2% 98.8%
3991921 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 38.0 3.23e-01 71.0% 75.4%
3747790 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 31.0 3.46e-01 75.4% 69.1%
4491683 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 45.0 3.76e-01 88.4% 73.3%
3652333 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 41.0 3.68e-01 82.6% 66.0%
3507849 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.55 49.0 3.47e-01 100.0% 76.7%
4027872 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 37.0 3.35e-01 71.0% 80.0%
3689674 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 41.0 3.42e-01 82.6% 50.8%
5017076 5090.1.1.11 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N 0.55 47.0 3.45e-01 97.1% 63.4%
3818862 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 40.0 3.65e-01 82.6% 63.3%
5031433 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.49e-01 78.3% 78.0%
5078434 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.53 45.0 4.06e-01 100.0% 96.0%
3627275 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 32.0 3.38e-01 75.4% 68.3%
3575066 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 31.0 3.35e-01 75.4% 68.3%
3476051 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 36.0 2.82e-01 72.5% 66.2%
3672678 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.52 39.0 3.69e-01 81.2% 80.0%
3363253 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 43.0 2.83e-01 100.0% 82.3%
3993139 5.1.3.113 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BCAS3_WD40 0.51 42.0 3.17e-01 98.6% 36.9%
3497068 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.46e-01 87.0% 88.6%
3795297 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 3.04e-01 100.0% 44.7%
5011661 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.51 37.0 2.68e-01 76.8% 33.2%
3916003 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.50 36.0 3.15e-01 78.3% 67.0%
3994715 11.1.1.430 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP-delta 0.50 42.0 3.97e-01 100.0% 81.1%