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MK075005.1AZB66763.1X__00017

Bact-Vir

MK075005.1__AZB66763.1__X__00017

Identity

Accession:: MK075005 ↗
Kingdom:: phage

Quality

84.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Triavirus› Staphylococcus_phage_phiSP119-2

TaxID: 2491317

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-97

PDB

Domain cluster: rep: NC_048710.1__YP_009838426.1__HWB65_gp16__00016__D5-92

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF10655.15 best	DUF2482	40.7	4.00e-10	100.0%	87.6%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1cx8A01	3.40.630.10	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases	0.59	47.0	3.25e-01	85.6%	68.7%
2g47A04	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.55	42.0	3.20e-01	84.4%	78.3%
1gaxA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.55	46.0	3.11e-01	92.2%	69.2%
4hesA00	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.54	46.0	3.38e-01	98.9%	60.7%
3p9aF00	1.10.132.80	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.53	45.0	3.93e-01	92.2%	81.3%
3sooA01	3.30.250.20	Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain	0.53	25.0	2.90e-01	74.4%	60.9%
6p4wB01	3.40.91.30	Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease ›	0.51	32.0	3.10e-01	93.3%	51.4%
2qikA02	3.10.490.10	Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like	0.51	44.0	3.73e-01	97.8%	98.1%
3mdqA01	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.51	38.0	3.46e-01	78.9%	61.0%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3786528	109.4.1.87 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6	0.59	52.0	3.04e-01	100.0%	25.6%
3220241	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.57	46.0	2.92e-01	84.4%	28.4%
4282159	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	46.0	3.88e-01	88.9%	78.1%
4799073	309.1.1.4 ↗	a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C	0.55	38.0	3.79e-01	72.2%	75.5%
2320781	206.1.3.14 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP	0.54	34.0	2.69e-01	100.0%	28.4%
1247620	101.1.1.72 ↗	alpha arrays › HTH › HTH › Three-helical HTH › GP3_package	0.53	42.0	3.73e-01	88.9%	76.3%
3494392	3937.1.1.2 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin	0.53	40.0	2.71e-01	82.2%	67.8%
3479162	277.1.1.0 ↗	a+b two layers › PX domain › PX domain › PX domain	0.53	29.0	2.81e-01	100.0%	41.8%
3937660	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.51	42.0	3.09e-01	92.2%	87.5%
5051509	2484.1.1.32 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C	0.51	41.0	2.98e-01	85.6%	39.6%
3224634	5001.1.1.41 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw	0.50	39.0	2.64e-01	85.6%	67.3%