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MK075005.1__AZB66778.1__X__00032

Bact-Vir

MK075005.1__AZB66778.1__X__00032

Identity

Accession:
MK075005 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Triavirus› Staphylococcus_phage_phiSP119-2

TaxID: 2491317

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-66
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.76 40.0 4.04e-01 73.4% 50.0%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.71 55.0 4.32e-01 92.2% 41.7%
1ee8A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.65 57.0 4.57e-01 95.3% 54.2%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.64 55.0 4.32e-01 92.2% 46.8%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 53.0 4.82e-01 93.8% 97.7%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.52e-01 92.2% 91.5%
3kkjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 51.0 3.86e-01 93.8% 79.1%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.18e-01 93.8% 35.1%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.26e-01 93.8% 23.8%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.60 48.0 4.45e-01 96.9% 95.5%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 3.57e-01 92.2% 79.7%
3ab1B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 51.0 3.57e-01 95.3% 72.6%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 50.0 2.98e-01 93.8% 47.9%
5twbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 50.0 3.51e-01 95.3% 70.1%
6b4oA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 51.0 4.21e-01 96.9% 92.4%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.16e-01 92.2% 22.8%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.59 47.0 3.77e-01 85.9% 89.4%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.08e-01 92.2% 38.3%
2cn2A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.02e-01 92.2% 33.2%
6qkgA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 50.0 4.23e-01 96.9% 80.2%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 49.0 3.07e-01 93.8% 79.7%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 52.0 4.24e-01 98.4% 93.2%
1onfA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 51.0 4.21e-01 98.4% 93.2%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 51.0 4.19e-01 98.4% 93.4%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 49.0 3.47e-01 98.4% 61.2%
3jb9K01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 3.12e-01 92.2% 23.1%
8c0zE01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 50.0 3.98e-01 96.9% 91.6%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 39.0 3.87e-01 100.0% 66.7%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 45.0 4.05e-01 90.6% 97.9%
1b37A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 49.0 3.32e-01 95.3% 83.8%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 3.09e-01 95.3% 23.1%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.57 48.0 4.34e-01 95.3% 84.3%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 48.0 3.28e-01 95.3% 61.2%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 47.0 3.26e-01 95.3% 65.8%
2v3aA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 49.0 3.86e-01 98.4% 85.2%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 46.0 3.14e-01 95.3% 86.5%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 3.83e-01 100.0% 87.1%
3fg2P02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 47.0 3.81e-01 98.4% 94.4%
5niiB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.28e-01 93.8% 78.1%
4fk1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.86e-01 98.4% 100.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.54 36.0 3.84e-01 98.4% 93.8%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.53 43.0 4.17e-01 92.2% 84.0%
3nlcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 3.07e-01 95.3% 83.1%
2e5vA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 2.96e-01 96.9% 67.7%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.53 45.0 3.03e-01 98.4% 91.2%
7x4qA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 41.0 3.28e-01 90.6% 82.8%
2a6hC05 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 39.0 3.74e-01 90.6% 69.3%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 43.0 4.26e-01 100.0% 90.9%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 44.0 4.31e-01 98.4% 90.0%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.66e-01 100.0% 97.4%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 34.0 3.34e-01 70.3% 67.1%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 38.0 3.98e-01 100.0% 100.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 42.0 4.26e-01 100.0% 95.5%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 41.0 2.88e-01 90.6% 75.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3210653 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.05e-01 92.2% 84.6%
3786392 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 54.0 3.36e-01 93.8% 40.3%
3513810 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 4.11e-01 93.8% 55.6%
3598659 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 52.0 3.15e-01 90.6% 17.9%
3586827 274.1.1.25 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.62 48.0 4.06e-01 87.5% 59.1%
3247727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 51.0 4.01e-01 93.8% 59.3%
3710725 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 47.0 2.90e-01 93.8% 12.7%
4176722 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.61 52.0 4.50e-01 95.3% 87.0%
3498476 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 52.0 2.87e-01 93.8% 14.3%
3256547 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 4.40e-01 93.8% 78.0%
3698027 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.60 49.0 3.23e-01 90.6% 73.4%
4583471 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.60 50.0 3.23e-01 92.2% 24.2%
3450480 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.60 50.0 3.33e-01 92.2% 28.2%
3732420 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.59 49.0 2.99e-01 90.6% 78.4%
3783013 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 50.0 3.20e-01 93.8% 43.1%
2213 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.59 49.0 3.18e-01 92.2% 23.4%
4625528 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.59 50.0 3.12e-01 93.8% 86.7%
4079351 2003.1.2.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 50.0 3.46e-01 93.8% 67.3%
3728847 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.59 51.0 3.11e-01 95.3% 38.8%
3792453 5.1.4.442 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, KNTC1_N 0.59 49.0 3.18e-01 92.2% 24.2%
3501909 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 47.0 3.72e-01 93.8% 42.3%
3394677 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 49.0 3.23e-01 93.8% 39.9%
4025332 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 51.0 3.21e-01 98.4% 28.9%
3260945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.72e-01 100.0% 95.0%
3067454 2003.1.2.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.58 49.0 3.35e-01 93.8% 70.0%
3416138 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 49.0 3.01e-01 93.8% 18.7%
863091 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 48.0 4.01e-01 92.2% 91.2%
4885962 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.58 49.0 3.45e-01 93.8% 71.2%
3694501 2003.1.3.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3 0.58 49.0 3.39e-01 93.8% 85.0%
4016568 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.58 48.0 2.89e-01 90.6% 74.4%
3723053 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 48.0 3.19e-01 93.8% 57.2%
2552766 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.58 49.0 3.76e-01 95.3% 95.5%
1391704 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 48.0 3.87e-01 92.2% 82.5%
5009633 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 4.32e-01 98.4% 94.4%
3645592 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.58 48.0 4.21e-01 95.3% 90.0%
1833392 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.58 48.0 3.63e-01 93.8% 97.5%
3998201 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 48.0 3.42e-01 93.8% 54.9%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.57 44.0 4.54e-01 96.9% 90.0%
4027850 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.57 51.0 3.10e-01 100.0% 67.2%
4026595 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.57 49.0 4.40e-01 95.3% 94.3%
3626269 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.57 47.0 3.86e-01 92.2% 65.8%
2846268 2003.1.2.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 48.0 3.49e-01 95.3% 91.0%
4890790 4167.1.1.1 ↗ beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 0.56 46.0 3.67e-01 90.6% 76.7%
4027422 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.56 39.0 4.14e-01 98.4% 87.3%
None — 0.56 49.0 3.21e-01 100.0% 90.9%
5053225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.18e-01 100.0% 71.0%
5049487 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 47.0 3.70e-01 98.4% 82.1%
4941102 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.55 46.0 2.97e-01 93.8% 21.7%
3703463 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 44.0 2.43e-01 93.8% 6.6%
4943121 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 46.0 2.79e-01 93.8% 14.9%
3935168 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 48.0 3.18e-01 100.0% 86.2%
3710514 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.96e-01 92.2% 28.8%
3934615 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 42.0 2.77e-01 85.9% 22.9%
3582902 5.1.10.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › SSL_N 0.53 43.0 3.51e-01 90.6% 63.2%
4339996 4167.1.1.1 ↗ beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 0.53 44.0 3.22e-01 92.2% 78.2%
3247995 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.52 38.0 3.73e-01 98.4% 72.9%
5009180 5.1.3.127 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Tricorn_N 0.52 43.0 2.91e-01 98.4% 85.5%
3995675 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 42.0 4.33e-01 98.4% 100.0%
3498145 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 42.0 4.20e-01 100.0% 93.8%