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MK088078.1__AYP28990.1__AS1_10__00010
Bact-VirMK088078.1__AYP28990.1__AS1_10__00010
Identity
- Accession:
- MK088078 ↗
- Kingdom:
- phage
Quality
86.6
mean pLDDT
Cluster
View cluster (20 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-84_150-183
Domain cluster:
rep: NC_010393.1__YP_001700681.1__STM1036.Gifsy2__00038__D6-86_149-187
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 37.0 | 4.43e-01 | 82.9% | 78.4% |
| 2kt2A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 39.0 | 4.64e-01 | 92.8% | 89.9% |
| 1fjeB01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 40.0 | 4.57e-01 | 91.9% | 82.7% |
| 2cveA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 36.0 | 4.43e-01 | 95.5% | 90.9% |
| 4f3sA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.64 | 45.0 | 4.25e-01 | 72.1% | 88.6% |
| 3en9A03 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 35.0 | 4.08e-01 | 78.4% | 80.8% |
| 6ahuH01 | 3.30.70.3250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit | 0.61 | 41.0 | 4.43e-01 | 88.3% | 81.1% |
| 8c46A01 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 51.0 | 5.06e-01 | 93.7% | 87.7% |
| 2ja9A02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.60 | 37.0 | 4.06e-01 | 91.9% | 78.6% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.60 | 37.0 | 3.88e-01 | 87.4% | 68.4% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.60 | 36.0 | 4.21e-01 | 81.1% | 84.8% |
| 2mzwA01 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.59 | 36.0 | 4.15e-01 | 96.4% | 86.8% |
| 2cpqA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 32.0 | 3.91e-01 | 89.2% | 93.8% |
| 4q0cA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 40.0 | 3.64e-01 | 73.9% | 72.9% |
| 5eriA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.44e-01 | 72.1% | 75.8% |
| 1hw1A02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.54 | 41.0 | 3.67e-01 | 83.8% | 58.3% |
| 2bv6A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.62e-01 | 76.6% | 84.6% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 41.0 | 3.12e-01 | 84.7% | 75.6% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 46.0 | 4.28e-01 | 100.0% | 100.0% |
| 6baoA03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.52 | 39.0 | 3.58e-01 | 80.2% | 85.4% |
| 3bpvA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.57e-01 | 76.6% | 83.2% |
| 7ovuA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 36.0 | 3.05e-01 | 72.1% | 41.5% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.51 | 39.0 | 3.53e-01 | 82.0% | 59.1% |
| 3ubcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 43.0 | 4.07e-01 | 92.8% | 81.7% |
| 2nnnC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.45e-01 | 74.8% | 87.9% |
| 2a0bA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.50 | 37.0 | 3.65e-01 | 76.6% | 76.3% |
| 1wn0A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.50 | 36.0 | 3.41e-01 | 77.5% | 62.6% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3286317 | 304.8.1.48 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › MNHE | 0.69 | 42.0 | 4.45e-01 | 96.4% | 68.0% |
| 4147865 | 304.3.1.11 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MNHE | 0.68 | 43.0 | 4.35e-01 | 100.0% | 64.2% |
| 3402258 | 304.8.1.49 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 | 0.67 | 49.0 | 5.21e-01 | 86.5% | 84.0% |
| 5042979 | 241.1.1.30 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF26556 | 0.67 | 46.0 | 4.21e-01 | 92.8% | 53.3% |
| 5020886 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.66 | 32.0 | 4.03e-01 | 89.2% | 80.0% |
| 3388863 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.66 | 45.0 | 4.19e-01 | 91.9% | 55.7% |
| 3271101 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.65 | 46.0 | 5.24e-01 | 100.0% | 100.0% |
| 3963458 | 3236.2.1.7 ↗ | alpha complex topology › Cation-proton antiporter › Sodium-dependent citrate symporter › Sodium-dependent citrate symporter › Glt_symporter | 0.65 | 51.0 | 3.45e-01 | 82.9% | 62.3% |
| 5029936 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.64 | 37.0 | 4.65e-01 | 96.4% | 96.9% |
| 5078076 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.64 | 43.0 | 4.52e-01 | 88.3% | 76.0% |
| 5015137 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.63 | 56.0 | 5.56e-01 | 100.0% | 93.0% |
| 4348036 | 304.3.1.11 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MNHE | 0.63 | 38.0 | 3.97e-01 | 92.8% | 65.0% |
| 5017844 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.63 | 53.0 | 5.18e-01 | 98.2% | 83.3% |
| 4034610 | 304.31.1.2 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › Wzz | 0.62 | 51.0 | 4.98e-01 | 91.9% | 84.0% |
| 4928071 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.62 | 51.0 | 3.72e-01 | 90.1% | 71.9% |
| 3183209 | 317.1.1.0 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase | 0.61 | 38.0 | 3.55e-01 | 91.9% | 47.6% |
| 5046535 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.61 | 41.0 | 4.25e-01 | 92.8% | 74.3% |
| 5045846 | 633.6.1.55 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › DUF1512 | 0.58 | 44.0 | 3.84e-01 | 77.5% | 80.6% |
| 3025534 | 304.58.1.0 ↗ | a+b two layers › Alpha-beta plaits › FepE-like › FepE-like | 0.58 | 51.0 | 4.30e-01 | 100.0% | 73.7% |
| 5070670 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.58 | 44.0 | 3.60e-01 | 80.2% | 87.5% |
| 3961140 | 3236.1.1.7 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › SBF_like | 0.56 | 43.0 | 3.41e-01 | 82.9% | 78.4% |
| 3932719 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.56 | 42.0 | 3.42e-01 | 80.2% | 88.1% |
| 3476713 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.56 | 45.0 | 3.30e-01 | 90.1% | 56.4% |
| 5050894 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.55 | 45.0 | 3.46e-01 | 86.5% | 76.7% |
| 3918515 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.55 | 43.0 | 3.07e-01 | 82.9% | 76.9% |
| 3220384 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.55 | 42.0 | 3.43e-01 | 82.0% | 76.3% |
| 4098939 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.55 | 45.0 | 3.38e-01 | 89.2% | 96.4% |
| 3303386 | 5050.1.1.15 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nodulin-like | 0.55 | 44.0 | 3.43e-01 | 86.5% | 98.4% |
| 4380569 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.54 | 44.0 | 3.33e-01 | 89.2% | 98.2% |
| 3282901 | 223.1.1.35 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 | 0.54 | 44.0 | 3.07e-01 | 86.5% | 42.0% |
| 3452412 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.54 | 47.0 | 3.38e-01 | 95.5% | 96.2% |
| 4194516 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.54 | 44.0 | 3.26e-01 | 88.3% | 94.1% |
| 3490375 | 309.1.1.8 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_M | 0.53 | 46.0 | 3.71e-01 | 100.0% | 55.8% |
| 4181298 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.53 | 47.0 | 3.19e-01 | 100.0% | 92.7% |
| 3253285 | 304.8.1.76 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF28943 | 0.53 | 43.0 | 4.25e-01 | 89.2% | 90.8% |
| 4066114 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.53 | 38.0 | 2.87e-01 | 75.7% | 30.5% |
| 4650330 | 603.5.1.0 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like | 0.52 | 36.0 | 3.59e-01 | 85.6% | 67.8% |
| 3285229 | 1079.1.1.8 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE | 0.52 | 39.0 | 3.30e-01 | 78.4% | 96.2% |
| 3275399 | 1075.5.1.5 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Rft-1 | 0.51 | 44.0 | 3.35e-01 | 93.7% | 80.8% |
| 4961841 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.51 | 43.0 | 4.11e-01 | 91.0% | 83.8% |
D2
high
residues 85-147
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g9mB00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.62 | 47.0 | 3.60e-01 | 81.0% | 69.9% |
| 5xrwC00 | 2.30.330.10 | Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like | 0.58 | 40.0 | 3.82e-01 | 73.0% | 83.3% |
| 3o8oF01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 43.0 | 2.99e-01 | 84.1% | 95.1% |
| 2ra6C00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 41.0 | 3.16e-01 | 79.4% | 39.9% |
| 4hn7A00 | 2.40.50.650 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 39.0 | 3.62e-01 | 76.2% | 81.2% |
| 3pmiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 35.0 | 3.50e-01 | 71.4% | 61.5% |
| 1dzkA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 40.0 | 3.10e-01 | 82.5% | 62.2% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 32.0 | 3.48e-01 | 71.4% | 78.7% |
| 2x45A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 38.0 | 3.06e-01 | 90.5% | 35.4% |
| 1celA00 | 2.70.100.10 | Mainly Beta › Distorted Sandwich › 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A › Glycoside hydrolase, family 7, domain | 0.52 | 40.0 | 2.55e-01 | 92.1% | 83.1% |
| 1lkeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 42.0 | 3.28e-01 | 96.8% | 54.8% |
| 2pmaA01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.51 | 43.0 | 3.58e-01 | 100.0% | 70.2% |
| 6u5vB07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.50 | 42.0 | 3.37e-01 | 93.7% | 59.7% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.50 | 42.0 | 3.70e-01 | 100.0% | 89.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3377093 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.58 | 40.0 | 3.25e-01 | 73.0% | 84.0% |
| 3717742 | 5.1.4.422 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Rol-3 | 0.58 | 46.0 | 2.62e-01 | 92.1% | 86.1% |
| 3633647 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.57 | 39.0 | 3.93e-01 | 71.4% | 81.5% |
| 4875038 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.55 | 46.0 | 3.58e-01 | 96.8% | 62.0% |
| 3808319 | 5.1.5.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF295 | 0.55 | 45.0 | 3.00e-01 | 93.7% | 21.4% |
| 3606615 | 241.10.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain | 0.54 | 44.0 | 4.05e-01 | 95.2% | 77.8% |
| 5077089 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 35.0 | 3.42e-01 | 73.0% | 85.7% |