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MK088078.1__AYP29007.1__AS1_27__00027
Bact-VirMK088078.1__AYP29007.1__AS1_27__00027
Identity
- Accession:
- MK088078 ↗
- Kingdom:
- phage
Quality
87.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-145
Domain cluster:
rep: MW960030.1__QWY82978.1__X__00024__D5-103
D2
high
residues 155-315
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 26.0 | 3.77e-01 | 99.4% | 72.0% |
| 3mkzN00 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 43.0 | 5.13e-01 | 93.8% | 97.3% |
| 3vwbA00 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 42.0 | 4.83e-01 | 94.4% | 97.4% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 22.0 | 2.44e-01 | 70.2% | 41.9% |
| 3fxqB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 24.0 | 3.14e-01 | 75.8% | 78.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3944883 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.66 | 41.0 | 4.97e-01 | 93.8% | 98.0% |
| 3281819 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.65 | 29.0 | 3.93e-01 | 77.6% | 81.2% |
| 4969699 | 101.1.6.40 ↗ | alpha arrays › HTH › HTH › TrpR › DUF1670 | 0.64 | 27.0 | 3.79e-01 | 72.0% | 78.8% |
| 3983783 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.61 | 24.0 | 3.02e-01 | 100.0% | 56.8% |
| 3970884 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.61 | 29.0 | 3.77e-01 | 75.8% | 77.9% |
| 4942942 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 30.0 | 4.18e-01 | 91.9% | 97.5% |
| 3590303 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.59 | 27.0 | 3.84e-01 | 91.9% | 90.7% |
| 4999499 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 28.0 | 3.60e-01 | 73.3% | 75.8% |
| 5072357 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.56 | 29.0 | 3.72e-01 | 73.3% | 84.2% |
| 4994028 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 34.0 | 4.07e-01 | 87.0% | 100.0% |
| 4973961 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 29.0 | 3.68e-01 | 90.1% | 93.7% |
D3
high
residues 359-485
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.81 | 67.0 | 6.82e-01 | 100.0% | 88.1% |
| 4nqfA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.76 | 67.0 | 6.38e-01 | 100.0% | 82.1% |
| 1wolA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.73 | 61.0 | 6.23e-01 | 100.0% | 91.0% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.62 | 44.0 | 4.47e-01 | 100.0% | 72.7% |
| 3vw7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.62 | 55.0 | 4.32e-01 | 100.0% | 83.3% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.59 | 44.0 | 4.59e-01 | 100.0% | 87.6% |
| 2l6hA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.57 | 45.0 | 4.25e-01 | 100.0% | 69.5% |
| 1ki1B01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.54 | 38.0 | 3.33e-01 | 72.4% | 73.4% |
| 1auwA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.54 | 49.0 | 4.02e-01 | 100.0% | 58.3% |
| 4k5yA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 47.0 | 3.85e-01 | 100.0% | 85.9% |
| 1y8aA02 | 1.10.3870.10 | Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily | 0.53 | 36.0 | 3.82e-01 | 92.9% | 75.9% |
| 4n6cB00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.53 | 40.0 | 3.62e-01 | 100.0% | 56.4% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 30.0 | 3.32e-01 | 72.4% | 67.6% |
| 2dkwA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 36.0 | 3.57e-01 | 70.9% | 97.7% |
| 1hbkA00 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.50 | 34.0 | 3.95e-01 | 89.0% | 98.9% |
| 1tqnA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.50 | 45.0 | 3.08e-01 | 100.0% | 67.3% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081945 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.86 | 77.0 | 7.44e-01 | 100.0% | 86.2% |
| 5029372 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.81 | 68.0 | 6.87e-01 | 100.0% | 88.3% |
| 4929447 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.80 | 67.0 | 6.54e-01 | 100.0% | 81.9% |
| 5022771 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.79 | 70.0 | 6.74e-01 | 100.0% | 84.3% |
| 5031106 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.78 | 65.0 | 6.84e-01 | 100.0% | 98.3% |
| 5013445 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.78 | 68.0 | 6.76e-01 | 100.0% | 90.0% |
| 5032306 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.77 | 65.0 | 6.20e-01 | 100.0% | 78.5% |
| 4938272 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.77 | 65.0 | 6.63e-01 | 100.0% | 91.2% |
| 5006341 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.77 | 67.0 | 6.70e-01 | 100.0% | 91.4% |
| 5050149 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.77 | 65.0 | 6.53e-01 | 100.0% | 88.5% |
| 4967769 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.76 | 64.0 | 6.74e-01 | 96.9% | 98.3% |
| 3686668 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.76 | 64.0 | 5.88e-01 | 89.0% | 80.6% |
| 4933411 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.76 | 66.0 | 6.70e-01 | 100.0% | 93.6% |
| 3499662 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.57 | 40.0 | 3.94e-01 | 71.7% | 99.3% |
| 3276268 | 1025.1.1.0 ↗ | alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain | 0.56 | 42.0 | 4.51e-01 | 86.6% | 90.9% |
| 5040635 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.55 | 42.0 | 4.43e-01 | 99.2% | 91.3% |
| 3412939 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.55 | 49.0 | 3.60e-01 | 100.0% | 72.5% |
| 4972312 | 2003.1.2.300 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat | 0.55 | 47.0 | 3.31e-01 | 96.9% | 54.2% |
| 3626002 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.54 | 48.0 | 4.44e-01 | 100.0% | 92.7% |
| 3582458 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.54 | 49.0 | 3.72e-01 | 100.0% | 73.2% |
| 3514283 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.53 | 48.0 | 4.50e-01 | 100.0% | 81.9% |
| 4322633 | 4177.2.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain › IKBKB_SDD | 0.53 | 46.0 | 3.60e-01 | 95.3% | 76.4% |
| 3400725 | 192.29.1.19 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Cornichon | 0.53 | 42.0 | 4.20e-01 | 100.0% | 83.0% |
| 4947004 | 2007.1.18.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) › MTD | 0.52 | 47.0 | 3.66e-01 | 100.0% | 90.1% |
| 3887886 | 604.3.1.11 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 | 0.52 | 39.0 | 3.22e-01 | 80.3% | 80.8% |
| 3237824 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.51 | 43.0 | 4.05e-01 | 89.0% | 82.0% |
| 3255108 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.51 | 43.0 | 3.22e-01 | 89.0% | 79.3% |
| 4564281 | 109.4.1.1253 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Atp25_C | 0.51 | 34.0 | 2.56e-01 | 72.4% | 27.2% |
| 3710472 | 604.3.1.11 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 | 0.51 | 38.0 | 3.13e-01 | 80.3% | 82.0% |
| 3695505 | 604.3.1.11 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 | 0.51 | 29.0 | 3.06e-01 | 72.4% | 60.0% |