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MK088078.1__AYP29009.1__AS1_29__00029
Bact-VirMK088078.1__AYP29009.1__AS1_29__00029
Identity
- Accession:
- MK088078 ↗
- Kingdom:
- phage
Quality
91.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-64
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3id7A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.69 | 52.0 | 3.11e-01 | 84.0% | 11.8% |
| 4jd9G00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.69 | 52.0 | 3.99e-01 | 84.0% | 83.3% |
| 3dd9D02 | 6.10.140.2060 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 47.0 | 5.03e-01 | 78.0% | 87.8% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.67 | 55.0 | 4.72e-01 | 100.0% | 76.4% |
| 3cl3A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.67 | 58.0 | 4.93e-01 | 100.0% | 76.2% |
| 3rpzA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.66 | 55.0 | 3.50e-01 | 100.0% | 84.1% |
| 7ml0M01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 56.0 | 4.81e-01 | 98.0% | 64.6% |
| 6ifsB02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.65 | 50.0 | 4.65e-01 | 92.0% | 95.8% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.65 | 47.0 | 4.20e-01 | 78.0% | 54.9% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.64 | 49.0 | 4.16e-01 | 98.0% | 50.0% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.64 | 54.0 | 4.72e-01 | 98.0% | 78.5% |
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 49.0 | 3.00e-01 | 86.0% | 14.0% |
| 3v76A03 | 1.10.8.260 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HI0933 insert domain-like | 0.62 | 48.0 | 4.58e-01 | 90.0% | 96.7% |
| 3f6tA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 52.0 | 3.84e-01 | 100.0% | 69.6% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.60 | 49.0 | 4.32e-01 | 98.0% | 75.3% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.60 | 51.0 | 4.23e-01 | 100.0% | 83.3% |
| 3l4aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.59 | 49.0 | 3.84e-01 | 100.0% | 62.0% |
| 4azsA03 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.58 | 48.0 | 3.55e-01 | 96.0% | 69.7% |
| 4kjmB01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.57 | 48.0 | 4.55e-01 | 100.0% | 100.0% |
| 2p0wA03 | 1.10.10.390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 37.0 | 3.72e-01 | 76.0% | 64.8% |
| 7x4eA01 | 1.10.1220.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE | 0.56 | 47.0 | 3.79e-01 | 98.0% | 93.5% |
| 1gkuB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 48.0 | 3.33e-01 | 100.0% | 80.6% |
| 3llkA02 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.55 | 46.0 | 3.41e-01 | 98.0% | 50.3% |
| 5uayA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.55 | 42.0 | 3.64e-01 | 86.0% | 63.9% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.54 | 40.0 | 3.62e-01 | 80.0% | 82.6% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 37.0 | 3.48e-01 | 76.0% | 74.2% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 36.0 | 2.87e-01 | 80.0% | 39.4% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3353748 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.79 | 70.0 | 5.28e-01 | 98.0% | 58.3% |
| 3591729 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.78 | 65.0 | 3.75e-01 | 94.0% | 41.3% |
| 3595160 | 5051.1.1.0 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like | 0.75 | 64.0 | 3.73e-01 | 96.0% | 43.2% |
| 4942992 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.74 | 61.0 | 6.11e-01 | 90.0% | 92.0% |
| 4541432 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.74 | 54.0 | 3.13e-01 | 82.0% | 8.8% |
| 3269634 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.70 | 53.0 | 5.05e-01 | 100.0% | 70.0% |
| 3739208 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 57.0 | 5.32e-01 | 100.0% | 83.1% |
| 4928145 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.67 | 51.0 | 4.36e-01 | 82.0% | 53.8% |
| 3256378 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.67 | 48.0 | 5.06e-01 | 100.0% | 86.7% |
| 3803972 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.66 | 51.0 | 4.57e-01 | 100.0% | 60.0% |
| 4062718 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.65 | 50.0 | 5.08e-01 | 100.0% | 84.0% |
| 3887959 | 103.1.1.53 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TTC3_9th | 0.65 | 51.0 | 5.00e-01 | 92.0% | 87.3% |
| 3925929 | 142.1.1.6 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Suv3_N | 0.64 | 51.0 | 4.03e-01 | 94.0% | 58.3% |
| 3598498 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.64 | 49.0 | 3.91e-01 | 90.0% | 41.0% |
| 4594328 | 181.1.1.2 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › FlhF_N | 0.63 | 51.0 | 4.58e-01 | 94.0% | 66.7% |
| 3780993 | 3443.1.1.5 ↗ | alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain › TTC3_9th | 0.63 | 49.0 | 4.75e-01 | 94.0% | 90.0% |
| 4582450 | 131.2.1.3 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd | 0.63 | 50.0 | 3.18e-01 | 92.0% | 18.2% |
| 4420813 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.62 | 46.0 | 4.42e-01 | 86.0% | 76.7% |
| 4263841 | 223.2.1.19 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 | 0.61 | 48.0 | 3.61e-01 | 98.0% | 77.3% |
| 3440432 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.61 | 50.0 | 4.31e-01 | 96.0% | 58.7% |
| 3958254 | 3317.1.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain | 0.60 | 52.0 | 4.66e-01 | 98.0% | 74.3% |
| 5070580 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.58 | 50.0 | 4.76e-01 | 98.0% | 96.6% |
| 4978241 | 102.2.1.1 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › RrnaAD | 0.57 | 50.0 | 4.46e-01 | 100.0% | 98.6% |
| 3616358 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.55 | 44.0 | 4.07e-01 | 96.0% | 77.1% |
| None | — | 0.55 | 46.0 | 2.79e-01 | 100.0% | 14.7% | |
| 4369324 | 101.1.1.142 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › clamp_Gag1-like | 0.55 | 37.0 | 3.62e-01 | 76.0% | 63.6% |
| 3607325 | 5071.1.1.0 ↗ | alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 0.52 | 45.0 | 4.52e-01 | 96.0% | 98.0% |
| 3494427 | 148.1.1.8 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TFIID_30kDa | 0.51 | 44.0 | 3.66e-01 | 100.0% | 53.8% |