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MK088078.1__AYP29016.1__AS1_36__00036
Bact-VirMK088078.1__AYP29016.1__AS1_36__00036
Identity
- Accession:
- MK088078 ↗
- Kingdom:
- phage
Quality
94.0
mean pLDDT
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-84
Domain cluster:
rep: OR188719.1__WNO25018.1__NKJIMNAM_00037__00037__D19-104
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11112.14 best | PyocinActivator | 69.6 | 2.90e-19 | 91.1% | 100.0% |
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 43.0 | 3.86e-01 | 100.0% | 43.1% |
| 3ofgB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.68 | 33.0 | 3.18e-01 | 72.2% | 41.4% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 41.0 | 3.90e-01 | 100.0% | 53.2% |
| 4lhfA00 | 6.10.200.10 | Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox | 0.65 | 55.0 | 5.52e-01 | 93.7% | 96.2% |
| 3qaoA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.63 | 49.0 | 4.15e-01 | 87.3% | 66.4% |
| 4y4mC00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.62 | 45.0 | 3.20e-01 | 93.7% | 24.3% |
| 1zarA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 49.0 | 4.71e-01 | 96.2% | 77.5% |
| 2qvoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 46.0 | 4.53e-01 | 96.2% | 79.3% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 38.0 | 3.51e-01 | 100.0% | 50.0% |
| 4fe9A01 | 2.60.40.3640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 45.0 | 3.93e-01 | 86.1% | 55.0% |
| 2kvvA00 | 1.10.1660.60 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 | 0.57 | 45.0 | 4.61e-01 | 88.6% | 88.5% |
| 4hw0C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 46.0 | 4.42e-01 | 94.9% | 78.5% |
| 1z6tA04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 41.0 | 4.05e-01 | 88.6% | 75.3% |
| 3gw2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 4.08e-01 | 97.5% | 73.1% |
| 5trdA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 45.0 | 4.49e-01 | 96.2% | 88.1% |
| 4rs8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 4.41e-01 | 100.0% | 86.9% |
| 5e1wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 45.0 | 3.60e-01 | 94.9% | 45.8% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 42.0 | 3.92e-01 | 98.7% | 66.3% |
| 2lycA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.54 | 38.0 | 3.34e-01 | 75.9% | 64.6% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 42.0 | 3.61e-01 | 96.2% | 50.0% |
| 1r1uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 40.0 | 3.89e-01 | 92.4% | 69.9% |
| 4zudA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 45.0 | 3.25e-01 | 96.2% | 98.4% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 4.21e-01 | 100.0% | 76.0% |
| 7sbeA01 | 1.10.132.70 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.54 | 38.0 | 2.87e-01 | 75.9% | 64.6% |
| 1ydlA00 | 3.30.70.1220 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like | 0.54 | 38.0 | 3.97e-01 | 86.1% | 84.5% |
| 4gyiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 43.0 | 4.14e-01 | 93.7% | 77.4% |
| 3thxB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.53 | 38.0 | 3.24e-01 | 74.7% | 93.0% |
| 1ucrB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.61e-01 | 75.9% | 73.3% |
| 2l02A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.80e-01 | 82.3% | 74.4% |
| 4b8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 43.0 | 3.65e-01 | 100.0% | 54.3% |
| 3cuoD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.65e-01 | 92.4% | 67.0% |
| 3zcoA00 | 1.10.10.2450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 42.0 | 3.75e-01 | 96.2% | 84.3% |
| 2nnnC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 43.0 | 3.76e-01 | 100.0% | 59.1% |
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 44.0 | 4.17e-01 | 100.0% | 85.4% |
| 6pcoC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 3.69e-01 | 100.0% | 59.1% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 39.0 | 3.68e-01 | 94.9% | 68.3% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 3.43e-01 | 97.5% | 50.0% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 42.0 | 3.94e-01 | 100.0% | 75.2% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.50 | 37.0 | 3.28e-01 | 79.7% | 87.4% |
| 3ez2A01 | 1.10.1660.30 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.50 | 39.0 | 4.06e-01 | 91.1% | 100.0% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963517 | 101.1.9.44 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PyocinActivator | 0.89 | 81.0 | 8.07e-01 | 97.5% | 100.0% |
| 3967843 | 101.1.9.44 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PyocinActivator | 0.82 | 71.0 | 7.31e-01 | 92.4% | 100.0% |
| 3392569 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.76 | 45.0 | 3.79e-01 | 100.0% | 36.8% |
| 5040398 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.68 | 48.0 | 4.57e-01 | 74.7% | 84.2% |
| 3723194 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 48.0 | 4.83e-01 | 92.4% | 86.3% |
| 4927802 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 46.0 | 3.74e-01 | 96.2% | 43.8% |
| 4025104 | 101.1.2.122 ↗ | alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K | 0.58 | 39.0 | 3.89e-01 | 75.9% | 68.8% |
| 3951867 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.56 | 45.0 | 4.13e-01 | 96.2% | 65.1% |
| 5047919 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 46.0 | 4.45e-01 | 100.0% | 80.0% |
| 4966804 | 101.1.2.530 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 | 0.56 | 42.0 | 4.17e-01 | 89.9% | 76.5% |
| 5006816 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.55 | 41.0 | 4.18e-01 | 94.9% | 82.5% |
| 4929751 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 43.0 | 4.21e-01 | 96.2% | 80.0% |
| 5029522 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.55 | 41.0 | 3.97e-01 | 91.1% | 69.5% |
| 5057033 | 101.1.2.751 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6293_C | 0.55 | 46.0 | 4.39e-01 | 100.0% | 81.1% |
| 5061096 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.55 | 34.0 | 3.41e-01 | 70.9% | 60.0% |
| 3948669 | 101.1.9.26 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like | 0.55 | 44.0 | 3.96e-01 | 97.5% | 62.6% |
| 3952925 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.54 | 41.0 | 4.00e-01 | 94.9% | 73.3% |
| 3587362 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.54 | 45.0 | 3.86e-01 | 100.0% | 54.7% |
| 3283252 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.54 | 41.0 | 3.74e-01 | 97.5% | 60.0% |
| 3587913 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.54 | 45.0 | 3.87e-01 | 94.9% | 60.0% |
| 5029662 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 40.0 | 3.82e-01 | 91.1% | 66.0% |
| 5024801 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.49e-01 | 86.1% | 53.9% |
| 4958728 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.53 | 34.0 | 3.42e-01 | 70.9% | 62.5% |
| 3976170 | 101.1.9.26 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like | 0.53 | 42.0 | 4.39e-01 | 96.2% | 100.0% |
| 5027056 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 44.0 | 4.29e-01 | 100.0% | 84.4% |
| 3279731 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.53 | 41.0 | 3.96e-01 | 94.9% | 72.6% |
| 4939406 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 3.41e-01 | 100.0% | 41.1% |
| 2674 | 101.1.2.95 ↗ | alpha arrays › HTH › HTH › winged helix domain › DsrD | 0.53 | 36.0 | 3.69e-01 | 79.7% | 75.7% |
| 4949735 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.52 | 40.0 | 3.99e-01 | 92.4% | 81.2% |
| 4962681 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.52 | 40.0 | 3.80e-01 | 91.1% | 69.5% |
| 5058358 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.52 | 40.0 | 3.97e-01 | 94.9% | 80.0% |
| 4429289 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 38.0 | 3.57e-01 | 83.5% | 60.0% |
| 5027113 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 38.0 | 3.89e-01 | 88.6% | 80.0% |
| 4996058 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.52 | 43.0 | 3.87e-01 | 92.4% | 83.5% |
| 5038398 | 101.1.2.673 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N | 0.52 | 33.0 | 3.44e-01 | 70.9% | 66.7% |
| 5067666 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.52 | 38.0 | 3.63e-01 | 91.1% | 64.0% |
| 149370 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.52 | 40.0 | 3.62e-01 | 94.9% | 58.0% |
| 4944376 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.52e-01 | 93.7% | 56.5% |
| 5061883 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.52 | 36.0 | 3.67e-01 | 82.3% | 73.8% |
| 5039585 | 101.1.2.673 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N | 0.52 | 38.0 | 3.69e-01 | 87.3% | 70.0% |
| 4962699 | 101.1.2.924 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7342 | 0.52 | 36.0 | 2.92e-01 | 74.7% | 41.8% |
| 143631 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.52 | 42.0 | 3.60e-01 | 100.0% | 52.1% |
| 5030252 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.52 | 43.0 | 4.06e-01 | 100.0% | 78.0% |
| 4944019 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.88e-01 | 88.6% | 85.3% |
| 5082317 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.51 | 41.0 | 4.01e-01 | 94.9% | 81.1% |
| 4440212 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.51 | 41.0 | 3.76e-01 | 100.0% | 66.1% |
| 3989662 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.51 | 42.0 | 3.71e-01 | 94.9% | 60.0% |
| 5030237 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 4.17e-01 | 96.2% | 92.5% |
| 4126575 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.51 | 42.0 | 3.56e-01 | 100.0% | 52.4% |
| 4968041 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.51 | 41.0 | 3.49e-01 | 96.2% | 51.0% |
| 5039087 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.51 | 39.0 | 3.62e-01 | 91.1% | 63.8% |
| 4940693 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.64e-01 | 87.3% | 67.0% |
| 5041253 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.47e-01 | 83.5% | 59.1% |
| 3782906 | 101.1.2.311 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA12 | 0.50 | 41.0 | 3.83e-01 | 97.5% | 71.8% |
| 5039413 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.50 | 38.0 | 3.36e-01 | 92.4% | 52.8% |
| 4993831 | 101.1.2.650 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7343 | 0.50 | 34.0 | 3.09e-01 | 78.5% | 49.1% |
| 5020805 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.50 | 36.0 | 3.43e-01 | 86.1% | 62.0% |
| 3604130 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 36.0 | 3.54e-01 | 83.5% | 71.8% |
| 5037176 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.50 | 38.0 | 3.75e-01 | 100.0% | 76.7% |
| 4945994 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 33.0 | 3.35e-01 | 78.5% | 67.5% |