←Back to structures

MK095605.1__AZS06301.1__MED16_gp61__00061

Bact-Vir

MK095605.1__AZS06301.1__MED16_gp61__00061

Identity

Accession:
MK095605 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantoea_phage_vB_PagS_MED16

TaxID: 2499074

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-97
PDB
Domain cluster: rep: LC768468.1__BEH84592.1__X__00031__D22-108
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 38.0 3.58e-01 76.7% 51.8%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.55 40.0 3.06e-01 94.4% 34.2%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 35.0 2.99e-01 94.4% 40.3%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 37.0 3.45e-01 94.4% 56.6%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 4.14e-01 94.4% 90.3%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 36.0 3.41e-01 100.0% 58.5%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 34.0 3.66e-01 90.0% 77.6%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 4.10e-01 95.6% 95.8%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 34.0 2.98e-01 94.4% 44.9%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 34.0 3.14e-01 88.9% 52.1%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 36.0 3.48e-01 98.9% 65.4%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 34.0 2.95e-01 94.4% 45.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3975705 3115.6.1.0 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.64 33.0 4.23e-01 87.8% 90.0%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 38.0 4.50e-01 94.4% 100.0%
3855974 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.56 38.0 4.15e-01 100.0% 84.0%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 39.0 4.22e-01 91.1% 88.0%
5067070 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.56 37.0 3.17e-01 94.4% 43.6%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 37.0 4.30e-01 95.6% 98.4%
4930890 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 36.0 3.85e-01 97.8% 80.0%
4978571 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.54 38.0 3.26e-01 94.4% 45.5%
5006014 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.54 37.0 3.29e-01 94.4% 49.2%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 42.0 4.38e-01 100.0% 90.6%
3913637 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.53 38.0 3.85e-01 94.4% 75.6%
5048078 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 36.0 2.83e-01 91.1% 35.2%
4648475 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.52 31.0 3.65e-01 87.8% 90.0%
4963083 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.50 38.0 2.93e-01 93.3% 34.9%