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MK097141.1__AZF88615.1__X__00051

Bact-Vir

MK097141.1__AZF88615.1__X__00051

Identity

Accession:
MK097141 ↗
Kingdom:
phage

Quality

90.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_P23

TaxID: 2488664

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-89
PDB
Domain cluster: rep: GQ478086.1__ACZ64040.1__X__00021__D3-94
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 38.0 3.53e-01 75.0% 45.0%
1ju2A02 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.58 45.0 3.56e-01 84.1% 71.3%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.56 37.0 3.55e-01 72.7% 55.7%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.56 44.0 3.78e-01 86.4% 91.2%
3wfwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 34.0 2.97e-01 100.0% 38.4%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 47.0 3.58e-01 97.7% 98.2%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 38.0 2.52e-01 76.1% 32.8%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.53 38.0 3.26e-01 75.0% 83.1%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.52 47.0 4.00e-01 100.0% 84.2%
3zt9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 45.0 3.59e-01 98.9% 87.0%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.52 30.0 2.86e-01 100.0% 43.4%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.52 38.0 3.36e-01 78.4% 89.3%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 44.0 3.14e-01 100.0% 64.9%
7zqiA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 4.24e-01 88.6% 98.8%
1na8B00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.51 45.0 3.81e-01 98.9% 84.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945393 7089.1.1.2 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 0.89 76.0 7.99e-01 97.7% 98.8%
3631248 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.61 43.0 3.91e-01 75.0% 57.6%
4454423 5.1.4.61 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PAN2_N 0.60 43.0 2.79e-01 73.9% 90.1%
3549751 223.2.1.23 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › NPR3 0.57 40.0 3.11e-01 73.9% 37.6%
4203354 252.2.1.9 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF27551 0.57 41.0 4.08e-01 77.3% 80.0%
3599937 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 45.0 4.34e-01 87.5% 92.0%
4973090 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.56 42.0 4.08e-01 78.4% 93.0%
4947839 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 37.0 3.39e-01 73.9% 48.8%
3297150 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 36.0 3.47e-01 71.6% 58.0%
3199457 59.1.2.1 ↗ beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC 0.55 34.0 3.46e-01 73.9% 61.1%
3722420 2008.1.1.143 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.54 39.0 3.28e-01 78.4% 65.0%
3796106 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 47.0 3.25e-01 98.9% 64.9%
3614530 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 38.0 3.54e-01 76.1% 85.2%
3611338 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 42.0 3.80e-01 87.5% 72.8%
3470640 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 47.0 3.13e-01 98.9% 63.8%
5049631 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 45.0 3.91e-01 95.5% 82.1%
3437304 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 35.0 3.46e-01 94.3% 63.2%
3484705 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.52 45.0 3.90e-01 95.5% 60.0%
3699767 295.1.1.7 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › MRP 0.52 47.0 3.84e-01 100.0% 74.5%
1758564 69.1.1.2 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.52 36.0 2.95e-01 72.7% 36.2%
3473111 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 45.0 2.90e-01 100.0% 41.3%
3520621 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 44.0 3.13e-01 97.7% 67.7%