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MK097141.1__AZF88633.1__X__00069

Bact-Vir

MK097141.1__AZF88633.1__X__00069

Identity

Accession:
MK097141 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_P23

TaxID: 2488664

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-65
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.68 59.0 4.78e-01 100.0% 61.3%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.67 59.0 4.59e-01 100.0% 69.3%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 51.0 4.19e-01 87.1% 84.9%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 5.16e-01 95.2% 91.9%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 55.0 4.41e-01 100.0% 52.7%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 5.09e-01 91.9% 89.4%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 5.15e-01 83.9% 98.2%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 51.0 3.83e-01 100.0% 36.5%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 5.00e-01 83.9% 89.7%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.61 49.0 4.79e-01 95.2% 88.4%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 49.0 4.21e-01 93.5% 97.2%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.59 51.0 3.90e-01 100.0% 41.4%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.58 48.0 4.03e-01 91.9% 57.8%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.58 42.0 3.63e-01 79.0% 88.6%
1bnkA00 3.10.300.10 Alpha Beta › Roll › 3-methyladenine DNA Glycosylase; Chain A › Methylpurine-DNA glycosylase (MPG) 0.58 50.0 3.59e-01 100.0% 76.5%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.57 48.0 4.49e-01 95.2% 100.0%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.57 43.0 3.96e-01 83.9% 98.8%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 44.0 3.95e-01 96.8% 61.2%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.84e-01 83.9% 84.3%
2f4mA01 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.56 50.0 3.32e-01 98.4% 67.0%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.83e-01 85.5% 84.8%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 47.0 3.98e-01 100.0% 85.1%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.55 46.0 4.35e-01 91.9% 86.5%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 41.0 2.65e-01 83.9% 68.4%
3p42A03 3.10.560.10 Alpha Beta › Roll › Outer membrane lipoprotein wza fold like › Outer membrane lipoprotein wza domain like 0.55 47.0 4.51e-01 98.4% 91.9%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.55 43.0 4.40e-01 91.9% 90.2%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 42.0 3.66e-01 90.3% 83.0%
1j7gA00 3.50.80.10 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase 0.53 42.0 3.27e-01 88.7% 90.3%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.08e-01 91.9% 81.8%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.53 47.0 3.62e-01 100.0% 68.3%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 47.0 3.59e-01 96.8% 52.2%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.52 44.0 3.42e-01 96.8% 81.5%
1wdiA02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.52 40.0 3.80e-01 83.9% 100.0%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.94e-01 96.8% 52.9%
4a7kA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 39.0 2.91e-01 82.3% 93.0%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.66e-01 95.2% 47.6%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.65e-01 98.4% 91.5%
1hxmB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.40e-01 100.0% 79.2%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3226640 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 55.0 4.68e-01 87.1% 94.9%
3427234 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 59.0 3.98e-01 100.0% 40.0%
5031361 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.67 49.0 4.03e-01 75.8% 52.4%
4119693 6064.1.1.0 ↗ few secondary structure elements › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 0.65 47.0 5.11e-01 77.4% 100.0%
3301560 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.64 48.0 2.94e-01 79.0% 97.7%
3173787 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 49.0 4.04e-01 85.5% 86.7%
None — 0.63 48.0 3.00e-01 82.3% 96.6%
3699899 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.63 51.0 4.13e-01 90.3% 84.2%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.87e-01 75.8% 100.0%
3500471 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.62 45.0 3.57e-01 77.4% 60.8%
3597599 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.61 49.0 4.20e-01 88.7% 91.0%
3509389 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 49.0 3.94e-01 91.9% 78.5%
4392365 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.60 47.0 2.94e-01 83.9% 99.1%
3741401 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.60 43.0 3.46e-01 79.0% 41.5%
4108467 3459.1.1.1 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 0.60 46.0 4.16e-01 83.9% 98.8%
4311698 241.2.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › PF26204 0.60 42.0 3.59e-01 77.4% 87.3%
3314636 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 48.0 3.45e-01 95.2% 60.0%
4110879 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.59 44.0 3.52e-01 83.9% 57.8%
4943366 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 51.0 4.64e-01 100.0% 87.1%
3781087 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.58 52.0 3.18e-01 98.4% 60.0%
4890345 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 50.0 4.57e-01 100.0% 84.7%
3853657 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 4.07e-01 100.0% 90.0%
3316959 206.1.3.57 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › FAM91_C 0.57 49.0 3.38e-01 100.0% 30.4%
3231483 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 47.0 3.50e-01 100.0% 60.5%
3188402 4099.1.1.31 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF26204 0.56 44.0 3.16e-01 88.7% 84.0%
4932697 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.66e-01 91.9% 95.4%
3972951 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.56 48.0 4.58e-01 100.0% 96.0%
3688080 216.1.1.29 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › PF26204 0.56 43.0 3.81e-01 88.7% 89.0%
4347919 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.55 47.0 4.27e-01 100.0% 90.0%
4503485 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.55 49.0 3.08e-01 98.4% 59.4%
4959054 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 3.54e-01 75.8% 65.9%
3833128 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 41.0 2.67e-01 83.9% 98.4%
5047887 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.54 46.0 3.29e-01 100.0% 83.8%
3406312 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.54 38.0 3.07e-01 79.0% 38.2%
3472428 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.53 45.0 4.23e-01 100.0% 85.0%
4064793 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.53 42.0 3.77e-01 96.8% 83.0%
4140248 5.1.4.577 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › YqgU 0.53 41.0 2.71e-01 90.3% 31.9%
4018087 4099.1.1.31 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF26204 0.53 41.0 3.68e-01 90.3% 91.6%
4379298 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 43.0 3.76e-01 98.4% 90.5%
4459294 11.1.1.100 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set,C2-set_2 0.52 44.0 3.16e-01 100.0% 45.0%
3241447 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 44.0 3.55e-01 93.5% 85.0%
3389763 1.1.7.45 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.52 43.0 3.86e-01 100.0% 98.9%
3945528 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 45.0 4.18e-01 100.0% 91.3%
3821077 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 43.0 2.76e-01 100.0% 41.3%
3244229 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.52 38.0 3.04e-01 79.0% 39.2%
3769451 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 45.0 2.80e-01 93.5% 43.4%
1162816 11.1.1.100 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set,C2-set_2 0.52 44.0 3.22e-01 100.0% 51.6%
3541953 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.52 44.0 3.25e-01 100.0% 53.5%
3854797 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 43.0 3.66e-01 100.0% 85.2%
4459065 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 42.0 3.84e-01 100.0% 67.8%
3744121 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.51 44.0 2.69e-01 95.2% 27.8%
3363601 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.51 42.0 2.78e-01 93.5% 48.1%
3829068 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.50 45.0 3.04e-01 100.0% 96.5%
3904085 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.68e-01 90.3% 74.3%