←Back to structures
MK138526.1__AZF89702.1__X__00091
Bact-VirMK138526.1__AZF89702.1__X__00091
Identity
- Accession:
- MK138526 ↗
- Kingdom:
- phage
Quality
95.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vandenendeviridae›
Pakpunavirus›
Pseudomonas_phage_vB_PaeM_LCK69
TaxID: 2488595
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-108
Domain cluster:
rep: NC_041878.1__YP_009594555.1__FDG95_gp015__00015__D24-108
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fu0A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.64 | 44.0 | 4.72e-01 | 97.2% | 86.2% |
| 2l6oA01 | 2.40.10.320 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain | 0.64 | 42.0 | 4.92e-01 | 80.2% | 100.0% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.63 | 35.0 | 4.16e-01 | 99.1% | 80.3% |
| 1ugiD00 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.62 | 37.0 | 4.19e-01 | 71.7% | 76.8% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.62 | 50.0 | 4.48e-01 | 100.0% | 62.0% |
| 4oebA00 | 2.60.270.50 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.59 | 53.0 | 4.91e-01 | 100.0% | 88.1% |
| 1jelP00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.58 | 39.0 | 4.23e-01 | 94.3% | 84.7% |
| 7a1rA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.57 | 49.0 | 4.72e-01 | 91.5% | 94.1% |
| 3lqmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 42.0 | 4.45e-01 | 100.0% | 91.1% |
| 3afhA02 | 3.90.800.10 | Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 | 0.56 | 40.0 | 4.09e-01 | 75.5% | 84.6% |
| 1w1wA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 41.0 | 3.07e-01 | 76.4% | 41.6% |
| 4jhcB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.56 | 42.0 | 3.52e-01 | 79.2% | 83.5% |
| 2o5vA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 41.0 | 3.41e-01 | 76.4% | 61.9% |
| 1tiqB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 44.0 | 3.78e-01 | 85.8% | 97.6% |
| 4ua3A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 47.0 | 3.94e-01 | 96.2% | 96.2% |
| 3tthB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 43.0 | 3.76e-01 | 86.8% | 100.0% |
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.54 | 28.0 | 3.30e-01 | 78.3% | 71.2% |
| 2hhzA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 43.0 | 3.98e-01 | 88.7% | 94.2% |
| 3hkmB00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.53 | 39.0 | 3.20e-01 | 80.2% | 74.6% |
| 4f8bA00 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.52 | 40.0 | 3.64e-01 | 80.2% | 84.9% |
| 1xf8A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 47.0 | 4.03e-01 | 99.1% | 97.6% |
| 4ksaA01 | 3.40.630.180 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.52 | 39.0 | 3.53e-01 | 82.1% | 83.2% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.52 | 41.0 | 4.22e-01 | 84.9% | 91.9% |
| 1lrzA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 46.0 | 3.77e-01 | 99.1% | 79.5% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.51 | 40.0 | 3.53e-01 | 84.0% | 98.8% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976796 | 244.3.1.5 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › GutM | 0.66 | 41.0 | 4.27e-01 | 83.0% | 66.7% |
| 4959666 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.65 | 55.0 | 4.88e-01 | 93.4% | 88.4% |
| 3229807 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.62 | 39.0 | 4.46e-01 | 81.1% | 85.0% |
| 3244285 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.62 | 38.0 | 4.41e-01 | 80.2% | 86.7% |
| 3254204 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.61 | 44.0 | 4.93e-01 | 84.9% | 100.0% |
| 5081207 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.60 | 44.0 | 4.84e-01 | 87.7% | 96.5% |
| 3543955 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.59 | 53.0 | 3.95e-01 | 100.0% | 48.9% |
| 4103307 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.59 | 40.0 | 4.35e-01 | 97.2% | 87.1% |
| 4009784 | 322.1.1.1 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › PTS-HPr | 0.57 | 41.0 | 4.41e-01 | 97.2% | 90.0% |
| 3278524 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.57 | 45.0 | 3.64e-01 | 83.0% | 76.9% |
| 4026900 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.57 | 46.0 | 4.48e-01 | 86.8% | 100.0% |
| 3719204 | 213.1.1.13 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MCD | 0.57 | 47.0 | 3.19e-01 | 87.7% | 97.5% |
| 3729944 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.56 | 44.0 | 4.42e-01 | 97.2% | 80.0% |
| 3357461 | 213.1.1.13 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MCD | 0.56 | 46.0 | 3.25e-01 | 87.7% | 96.2% |
| 1176515 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.56 | 41.0 | 3.45e-01 | 75.5% | 72.9% |
| 3969146 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.56 | 48.0 | 4.00e-01 | 94.3% | 97.8% |
| 5030060 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.56 | 44.0 | 3.76e-01 | 84.9% | 87.4% |
| 3798676 | 213.1.1.13 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MCD | 0.56 | 45.0 | 3.26e-01 | 86.8% | 97.6% |
| 4103583 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.55 | 44.0 | 3.99e-01 | 85.8% | 100.0% |
| 4181091 | 2004.1.1.429 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 | 0.55 | 44.0 | 3.04e-01 | 85.8% | 43.0% |
| 3200776 | 213.1.1.72 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 | 0.55 | 43.0 | 3.49e-01 | 84.9% | 99.0% |
| 5031677 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.55 | 43.0 | 3.71e-01 | 84.9% | 90.0% |
| 4954892 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.54 | 39.0 | 2.77e-01 | 75.5% | 33.8% |
| 3938991 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.54 | 42.0 | 3.70e-01 | 84.9% | 69.1% |
| 5050586 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.54 | 43.0 | 3.97e-01 | 84.9% | 97.0% |
| 3289107 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.54 | 44.0 | 3.78e-01 | 86.8% | 90.9% |
| 4984958 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.54 | 40.0 | 2.79e-01 | 77.4% | 34.0% |
| 4666114 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.53 | 42.0 | 2.92e-01 | 85.8% | 41.0% |
| 3179143 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 42.0 | 3.67e-01 | 86.8% | 97.6% |
| 5051023 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.53 | 44.0 | 4.29e-01 | 91.5% | 99.2% |
| 4217811 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.53 | 42.0 | 2.89e-01 | 85.8% | 41.3% |
| None | — | 0.53 | 41.0 | 2.95e-01 | 84.9% | 47.6% | |
| 4040888 | 2004.1.1.429 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 | 0.52 | 42.0 | 2.90e-01 | 85.8% | 44.2% |
| 4218863 | 213.1.1.21 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C | 0.52 | 47.0 | 3.66e-01 | 100.0% | 83.5% |
| 4009284 | 2004.1.1.478 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15, AAA_21 | 0.52 | 41.0 | 2.88e-01 | 84.9% | 44.8% |
| 4135052 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.51 | 41.0 | 2.85e-01 | 85.8% | 42.9% |
| 3197481 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.51 | 44.0 | 3.67e-01 | 94.3% | 95.7% |
| 136185 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.51 | 40.0 | 3.53e-01 | 84.0% | 98.8% |
| None | — | 0.51 | 40.0 | 2.82e-01 | 85.8% | 41.6% | |
| 4045276 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.51 | 40.0 | 2.82e-01 | 84.9% | 44.4% |
| 5072254 | 213.1.1.37 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_18 | 0.51 | 45.0 | 3.91e-01 | 99.1% | 80.5% |
| 4658924 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.51 | 40.0 | 2.81e-01 | 84.9% | 44.7% |
| None | — | 0.51 | 40.0 | 3.32e-01 | 85.8% | 90.9% | |
| 3740733 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.51 | 40.0 | 2.92e-01 | 87.7% | 51.2% |
| 4494959 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.51 | 40.0 | 3.72e-01 | 86.8% | 77.1% |
| 4933900 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.51 | 39.0 | 3.55e-01 | 82.1% | 82.8% |
| 3225583 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.51 | 39.0 | 3.73e-01 | 84.9% | 94.6% |
| 3960005 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 40.0 | 3.58e-01 | 84.9% | 75.3% |
| 3596980 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.50 | 43.0 | 3.47e-01 | 93.4% | 88.8% |
| 4199352 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.50 | 40.0 | 2.77e-01 | 84.9% | 44.2% |
| 4573440 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.50 | 39.0 | 2.76e-01 | 85.8% | 42.7% |