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MK138526.1__AZF89742.1__X__00131

Bact-Vir

MK138526.1__AZF89742.1__X__00131

Identity

Accession:
MK138526 ↗
Kingdom:
phage

Quality

92.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Pakpunavirus› Pseudomonas_phage_vB_PaeM_LCK69

TaxID: 2488595

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-73
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.70 52.0 5.02e-01 100.0% 69.2%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 54.0 5.20e-01 92.5% 74.7%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.68 50.0 3.01e-01 77.6% 36.7%
3en9A03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 52.0 5.14e-01 89.6% 87.7%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 54.0 4.85e-01 95.5% 79.6%
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.64 36.0 4.15e-01 76.1% 80.0%
8fwpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 52.0 3.62e-01 100.0% 80.6%
1u0kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 48.0 3.94e-01 100.0% 46.2%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.60 53.0 3.37e-01 100.0% 28.6%
3awmA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 45.0 2.85e-01 89.6% 60.9%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 3.39e-01 98.5% 82.1%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.57 46.0 3.76e-01 89.6% 49.3%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.02e-01 91.0% 65.1%
3og5A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 44.0 4.15e-01 89.6% 81.2%
6r2nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 47.0 3.85e-01 100.0% 85.7%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 44.0 3.19e-01 88.1% 64.4%
1hkgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 47.0 3.92e-01 100.0% 85.4%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.56 46.0 2.97e-01 91.0% 53.8%
4v1al00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.56 48.0 3.85e-01 100.0% 48.9%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 44.0 3.60e-01 91.0% 67.9%
3h1tA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.55 48.0 3.87e-01 100.0% 77.4%
3dmgA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 44.0 3.26e-01 92.5% 78.4%
4mtlA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 43.0 3.14e-01 89.6% 77.9%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.55 41.0 3.18e-01 77.6% 38.0%
4obuA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.54 43.0 3.06e-01 92.5% 29.1%
4ritA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.53 43.0 3.06e-01 92.5% 29.8%
1vkwA02 3.40.109.30 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › putative nitroreductase (tm1586), domain 2 0.53 46.0 4.12e-01 100.0% 94.8%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 45.0 3.98e-01 100.0% 75.7%
2fdoA00 3.30.1970.10 Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like 0.52 41.0 3.75e-01 100.0% 64.5%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.51 37.0 3.57e-01 77.6% 68.0%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.51 43.0 3.50e-01 97.0% 76.1%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 43.0 3.03e-01 100.0% 79.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3962463 4011.1.1.0 ↗ beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins 0.71 43.0 4.73e-01 76.1% 74.5%
4972532 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.66 49.0 4.39e-01 77.6% 58.9%
3433449 323.1.1.7 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase 0.64 49.0 3.21e-01 85.1% 61.3%
3259141 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.64 39.0 4.08e-01 74.6% 68.3%
3969016 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.63 53.0 3.69e-01 100.0% 33.6%
5005640 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.63 42.0 4.34e-01 76.1% 72.3%
4608174 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.60 40.0 3.64e-01 76.1% 51.1%
3167354 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.60 40.0 3.95e-01 76.1% 64.4%
4171356 2495.1.1.0 ↗ a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain 0.60 50.0 4.39e-01 100.0% 96.4%
3708645 230.4.1.0 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like 0.59 38.0 3.32e-01 71.6% 42.9%
4376882 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 49.0 3.49e-01 100.0% 37.6%
3271024 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.58 46.0 3.39e-01 89.6% 77.9%
3281518 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.57 49.0 3.50e-01 100.0% 71.0%
3296177 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.57 39.0 3.66e-01 70.1% 68.8%
2089693 2492.1.1.13 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PROCT 0.57 48.0 3.21e-01 100.0% 34.7%
3580898 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 49.0 3.76e-01 98.5% 42.5%
3708849 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.56 49.0 3.33e-01 100.0% 31.0%
4954852 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.56 41.0 3.03e-01 77.6% 89.0%
3216304 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 39.0 2.49e-01 74.6% 25.9%
5010744 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 44.0 4.54e-01 89.6% 93.8%
4863601 3799.1.1.1 ↗ alpha bundles › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA_adhesion 0.55 43.0 3.92e-01 83.6% 69.0%
3925690 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.54 39.0 3.76e-01 77.6% 68.0%
3857887 5094.1.1.11 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 0.53 38.0 3.74e-01 91.0% 69.3%
3560901 601.19.1.20 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.53 38.0 3.74e-01 91.0% 69.3%
4001707 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.53 39.0 3.74e-01 89.6% 65.9%
4964745 11.1.1.1420 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7350 0.53 42.0 3.31e-01 89.6% 47.3%
5041727 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.52 44.0 3.44e-01 98.5% 73.1%
4369577 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.52 34.0 3.57e-01 74.6% 76.7%
5000672 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.51 34.0 3.22e-01 70.1% 54.1%
4878064 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.51 37.0 3.03e-01 98.5% 39.1%