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AZF89916.1

Arc-Vir

MK170447__AZF89916.1__X__00021

Identity

Accession:: MK170447 ↗
Protein ID:: AZF89916.1 ↗
Kingdom:: archaea

Quality

74.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Methanosarcina_virus_MetMV

TaxID: 2488574

Cluster

View cluster (51 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 556-621

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2bzbA00	4.10.280.10	Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain	0.86	57.0	5.87e-01	71.2%	72.6%
2hytA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.68	60.0	4.31e-01	100.0%	49.7%
6ygiB01	1.10.4090.10	Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus	0.62	47.0	3.62e-01	78.8%	49.3%
5jrcA00	1.20.58.2140	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	51.0	3.72e-01	97.0%	67.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4473674	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.65	45.0	3.84e-01	72.7%	86.4%
3556894	515.1.1.1 ↗	alpha arrays › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › STAT_int	0.62	50.0	4.05e-01	87.9%	54.4%
5028558	5058.1.1.2 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st	0.61	49.0	4.32e-01	89.4%	81.0%

D2 medium residues 11-57_101-219_312-361

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kdrA02	3.40.140.120	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 ›	0.61	27.0	3.48e-01	74.1%	70.1%
1gn4A02	3.55.40.20	Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain	0.56	25.0	3.28e-01	73.6%	73.0%
4ffkA02	3.55.40.20	Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain	0.54	25.0	3.15e-01	73.6%	69.1%
1xreA02	3.55.40.20	Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain	0.54	23.0	3.07e-01	73.6%	71.4%
7bjkA02	3.55.40.20	Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain	0.52	22.0	2.92e-01	75.0%	69.9%
1f81A00	1.20.1020.10	Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain	0.50	17.0	2.65e-01	76.4%	72.4%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3291237	1.1.5.15 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red	0.56	21.0	2.78e-01	79.2%	59.2%
3595426	228.1.1.0 ↗	a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C	0.54	24.0	3.23e-01	73.6%	76.4%
3385712	228.1.1.1 ↗	a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C	0.54	24.0	2.99e-01	74.5%	63.0%
4185540	228.1.1.1 ↗	a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C	0.52	24.0	3.00e-01	76.4%	67.2%
3721254	228.1.1.1 ↗	a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C	0.52	24.0	2.94e-01	75.0%	65.4%
3621694	382.1.1.0 ↗	few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like	0.51	23.0	3.20e-01	82.4%	84.8%

D3 medium residues 72-100_362-400_430-555

PDB

Domain cluster: rep: MK892597__QDP52173.1__Unbinned2902contig1001-15__00016__D353-527

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3okqA00	1.20.58.1540	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain	0.73	36.0	4.38e-01	71.1%	72.0%
3lbxB01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	25.0	3.31e-01	94.3%	83.2%
1i6zA00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.51	26.0	3.13e-01	94.3%	70.4%
1vq0A02	3.90.1280.10	Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like	0.51	15.0	2.54e-01	77.3%	75.4%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3308318	192.2.1.31 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1	0.55	27.0	3.26e-01	95.4%	68.5%
3553058	605.3.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain	0.55	31.0	3.68e-01	91.2%	77.9%
3916642	192.2.1.56 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9	0.55	29.0	3.24e-01	73.2%	62.7%
3536764	101.1.11.98 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix › Pescadillo_N	0.54	18.0	2.56e-01	82.0%	59.0%
4978274	4163.1.1.0 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like	0.53	24.0	3.08e-01	80.9%	71.3%
4606152	4163.1.1.1 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5	0.52	32.0	3.42e-01	85.1%	68.2%

D4 medium residues 249-311

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4bwiB02	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.59	43.0	3.13e-01	79.4%	56.8%
3gw6D02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	44.0	3.46e-01	88.9%	64.0%
3gw6A03	3.30.2460.10	Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain	0.52	37.0	3.86e-01	79.4%	91.2%
3anzC00	2.70.240.10	Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA	0.51	41.0	2.79e-01	96.8%	81.0%

ECOD (28)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3387999	2003.2.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3	0.75	48.0	3.28e-01	71.4%	19.1%
3587268	2.1.1.0 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein	0.64	45.0	3.66e-01	74.6%	44.2%
3227523	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.63	45.0	3.64e-01	77.8%	79.2%
4976856	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.62	46.0	3.07e-01	82.5%	44.8%
3460576	109.3.1.162 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5	0.62	38.0	2.51e-01	74.6%	14.2%
3860802	10.12.1.1 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding	0.60	43.0	3.42e-01	77.8%	94.1%
4160692	171.1.1.1 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3	0.58	46.0	3.26e-01	92.1%	66.7%
4233683	171.1.1.1 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3	0.58	46.0	3.29e-01	92.1%	68.2%
5019455	331.1.1.0 ↗	a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like	0.58	49.0	3.57e-01	100.0%	41.5%
3544841	10.12.1.1 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding	0.57	41.0	3.31e-01	77.8%	93.3%
3219973	385.1.1.11 ↗	few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › IL17	0.57	40.0	3.50e-01	76.2%	85.0%
4961086	282.1.1.1 ↗	a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS	0.55	44.0	3.31e-01	88.9%	37.8%
3957104	11.13.1.3 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › MspA	0.55	40.0	2.95e-01	88.9%	26.8%
3832498	4967.1.1.6 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2	0.54	45.0	3.20e-01	96.8%	79.1%
4965661	327.7.1.2 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C	0.54	45.0	4.16e-01	98.4%	95.3%
3606812	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.54	37.0	2.26e-01	73.0%	46.2%
3273636	328.1.1.0 ↗	a+b two layers › IF3-like › AlbA-like › AlbA-like	0.53	37.0	3.70e-01	85.7%	72.3%
3331651	11.1.4.8 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1	0.53	40.0	3.19e-01	84.1%	85.0%
5045394	282.1.1.1 ↗	a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS	0.53	40.0	3.15e-01	88.9%	37.5%
4989640	7512.1.1.24 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5	0.53	30.0	1.95e-01	98.4%	11.9%
4947221	512.1.1.0 ↗	a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523)	0.52	32.0	2.94e-01	84.1%	41.1%
5011023	512.1.1.0 ↗	a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523)	0.51	32.0	3.09e-01	81.0%	48.8%
5082213	512.1.1.1 ↗	a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st	0.51	32.0	2.96e-01	87.3%	43.3%
2593796	221.4.1.1 ↗	a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX	0.51	28.0	3.00e-01	96.8%	60.4%
3562570	306.10.1.0 ↗	a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12	0.51	40.0	3.20e-01	88.9%	82.1%
1943	11.13.1.1 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin	0.51	41.0	2.79e-01	96.8%	66.6%
4935003	512.1.1.1 ↗	a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st	0.51	31.0	3.02e-01	85.7%	50.7%
4984491	304.139.1.0 ↗	a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related	0.50	42.0	3.15e-01	96.8%	53.7%