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AZF89948.1

Arc-Vir

MK170447__AZF89948.1__X__00076

Identity

Accession:
MK170447 ↗
Protein ID:
AZF89948.1 ↗
Kingdom:
archaea

Quality

86.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Methanosarcina_virus_MetMV

TaxID: 2488574

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-70
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.79 64.0 6.28e-01 88.2% 81.5%
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.78 58.0 4.19e-01 96.1% 28.9%
3kreA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 43.0 3.49e-01 72.5% 55.7%
1tj7A02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.61 42.0 2.63e-01 72.5% 41.6%
2jrjA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 40.0 3.99e-01 84.3% 73.1%
1myrA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 46.0 2.64e-01 98.0% 9.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979944 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.93 66.0 7.34e-01 78.4% 95.0%
3214194 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.72 60.0 5.49e-01 90.2% 73.8%
3849360 376.1.3.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF 0.71 61.0 5.24e-01 92.2% 65.3%
5052621 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.68 49.0 4.87e-01 86.3% 72.7%
3656818 376.1.3.9 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_2 0.68 49.0 4.39e-01 84.3% 55.7%
3169402 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 49.0 4.76e-01 98.0% 83.3%
4888518 7584.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.58 40.0 2.83e-01 74.5% 51.7%
3308238 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.58 42.0 4.60e-01 76.5% 100.0%
5020556 377.1.1.31 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.58 43.0 4.42e-01 86.3% 86.0%
3613876 906.1.1.0 ↗ few secondary structure elements › CCCH zinc finger › CCCH zinc finger › CCCH zinc finger 0.58 48.0 3.38e-01 92.2% 35.2%
2721320 386.1.1.7 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-U11-48K 0.58 35.0 3.66e-01 84.3% 66.7%
3174062 7022.1.1.1 ↗ alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT 0.53 43.0 2.77e-01 96.1% 20.5%
4309282 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.50 42.0 2.86e-01 94.1% 95.8%
D2 high residues 81-147
PDB
Domain cluster: rep: IMGVR_UViG_3300011438_000020-3300011438-Ga0137451_100004559__D104-162
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ly1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 41.0 3.35e-01 71.6% 82.9%
1ni4A00 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.59 46.0 2.91e-01 85.1% 87.3%
3ug7C00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 37.0 2.44e-01 98.5% 16.3%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 45.0 3.75e-01 100.0% 92.8%
3h5tA03 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 39.0 3.00e-01 80.6% 70.7%
3hj4A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 45.0 3.68e-01 100.0% 95.4%
1n6zA00 3.10.20.250 Alpha Beta › Roll › Ubiquitin-like (UB roll) › YML108W-like 0.51 34.0 2.98e-01 70.1% 65.7%
6j7xA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.50 45.0 2.97e-01 100.0% 28.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032367 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.72 57.0 4.88e-01 85.1% 56.0%
4333050 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.67 45.0 3.89e-01 70.1% 78.1%
3254314 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 50.0 3.03e-01 100.0% 16.0%
4886489 601.25.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MMR_HSR1 0.52 37.0 2.80e-01 74.6% 92.1%
3275078 6166.1.1.1 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.52 39.0 2.73e-01 82.1% 94.5%
3250774 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.50 43.0 3.18e-01 97.0% 94.6%