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AZF89979.1

Arc-Vir

MK170447__AZF89979.1__X__00052

Identity

Accession:
MK170447 ↗
Protein ID:
AZF89979.1 ↗
Kingdom:
archaea

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Methanosarcina_virus_MetMV

TaxID: 2488574

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
Domain cluster: rep: NC_049856.1__YP_009905497.1__H1Z35_gp079__00172__D8-71
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 53.0 5.41e-01 90.0% 75.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 55.0 5.84e-01 88.6% 87.1%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 55.0 5.94e-01 90.0% 93.2%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 50.0 5.10e-01 100.0% 72.5%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.71 56.0 5.85e-01 94.3% 95.2%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 56.0 4.80e-01 90.0% 56.5%
3vgiA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.69 48.0 3.22e-01 72.9% 29.3%
3ammA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.68 47.0 3.22e-01 72.9% 30.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 5.14e-01 90.0% 87.1%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 38.0 3.29e-01 82.9% 36.1%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 4.43e-01 91.4% 63.8%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 42.0 4.34e-01 70.0% 77.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 4.63e-01 88.6% 74.0%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 46.0 4.00e-01 78.6% 80.4%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.86e-01 90.0% 83.3%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.61 50.0 3.93e-01 88.6% 48.6%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 4.93e-01 91.4% 87.1%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.92e-01 80.0% 95.5%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 28.0 2.49e-01 75.7% 29.3%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.61 48.0 3.98e-01 88.6% 48.5%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.60 49.0 3.91e-01 88.6% 48.2%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.60 41.0 3.72e-01 71.4% 91.8%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 4.69e-01 88.6% 89.4%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 47.0 2.94e-01 90.0% 66.8%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 47.0 3.76e-01 88.6% 49.7%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 5.00e-01 92.9% 100.0%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.75e-01 85.7% 79.8%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 46.0 4.78e-01 90.0% 97.0%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.72e-01 80.0% 84.5%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.56 41.0 2.60e-01 78.6% 18.7%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 2.95e-01 78.6% 56.0%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 44.0 3.63e-01 85.7% 85.5%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.55 46.0 3.89e-01 100.0% 81.2%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.54 42.0 3.34e-01 82.9% 65.9%
1p0zA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 39.0 3.18e-01 78.6% 84.0%
5ixgA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.52 35.0 2.73e-01 70.0% 71.4%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 35.0 2.77e-01 71.4% 59.2%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 38.0 3.13e-01 84.3% 92.7%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 41.0 2.62e-01 91.4% 51.9%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 36.0 3.07e-01 77.1% 66.4%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3439789 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.73 56.0 4.22e-01 84.3% 50.9%
5061147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 66.0 5.94e-01 100.0% 82.1%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 65.0 5.57e-01 100.0% 68.2%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.72 50.0 4.96e-01 90.0% 68.0%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 53.0 5.37e-01 91.4% 78.6%
5031165 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.68 54.0 5.47e-01 90.0% 84.3%
3536595 2004.1.1.413 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tudor_2 0.67 54.0 4.41e-01 88.6% 80.8%
4982570 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.67 39.0 3.93e-01 78.6% 57.1%
3680900 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.67 53.0 4.41e-01 85.7% 90.0%
4602887 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 46.0 4.56e-01 72.9% 100.0%
4971602 316.1.1.45 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF4269 0.64 46.0 3.61e-01 74.3% 55.4%
5000724 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 46.0 4.20e-01 75.7% 96.8%
4563194 274.1.1.40 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › 17kDa_Anti_2 0.64 37.0 3.40e-01 81.4% 41.5%
3347865 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.64 49.0 4.18e-01 85.7% 87.5%
3366703 2.1.1.157 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 0.63 45.0 3.72e-01 77.1% 77.0%
3232054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.12e-01 90.0% 55.0%
3482706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 4.06e-01 97.1% 94.7%
5010078 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 44.0 2.80e-01 75.7% 36.1%
3915553 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.62 50.0 4.22e-01 90.0% 92.5%
5030410 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 45.0 4.03e-01 75.7% 94.7%
5076310 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.62 44.0 3.47e-01 75.7% 54.8%
4998245 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.62 44.0 3.43e-01 75.7% 54.8%
135449 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.61 50.0 3.93e-01 88.6% 48.6%
3677761 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.61 49.0 4.09e-01 88.6% 52.8%
3446499 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.61 43.0 3.73e-01 77.1% 84.2%
4030846 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.61 49.0 3.97e-01 88.6% 52.6%
5069801 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.61 49.0 3.92e-01 88.6% 49.3%
4984069 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.61 49.0 3.92e-01 88.6% 50.0%
5041169 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.60 49.0 3.90e-01 88.6% 50.0%
135448 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.60 48.0 3.83e-01 88.6% 49.7%
4951355 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.60 40.0 2.73e-01 70.0% 34.6%
5031992 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.59 42.0 3.34e-01 75.7% 54.8%
3993317 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 40.0 4.10e-01 74.3% 71.4%
5045455 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.59 48.0 3.84e-01 88.6% 52.2%
5052758 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.59 47.0 3.83e-01 88.6% 53.3%
4990656 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.59 48.0 3.83e-01 88.6% 51.4%
2724284 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.58 43.0 3.48e-01 78.6% 84.8%
4493573 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.58 50.0 3.71e-01 100.0% 91.0%
4978367 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.58 47.0 3.73e-01 88.6% 54.5%
3492173 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.58 46.0 2.97e-01 88.6% 30.6%
3931674 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 42.0 3.65e-01 78.6% 93.9%
5056388 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.58 46.0 3.79e-01 88.6% 53.4%
3572103 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.58 43.0 3.45e-01 78.6% 46.7%
3432830 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 42.0 2.61e-01 80.0% 20.7%
4964699 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.57 43.0 3.97e-01 85.7% 73.0%
4024970 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 41.0 2.57e-01 78.6% 17.2%
5072187 321.1.1.7 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.57 44.0 2.71e-01 85.7% 14.9%
4593266 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 43.0 4.21e-01 81.4% 78.7%
None — 0.56 44.0 2.57e-01 91.4% 52.7%
3626173 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 40.0 2.64e-01 78.6% 25.2%
4932312 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.56 39.0 3.15e-01 72.9% 81.5%
3719807 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 37.0 3.11e-01 71.4% 84.3%
3430888 244.1.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.55 45.0 2.80e-01 97.1% 87.1%
5046054 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 38.0 3.25e-01 74.3% 86.7%
3283087 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.54 46.0 2.65e-01 98.6% 85.9%
3403399 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.54 42.0 3.65e-01 87.1% 93.9%
3520868 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.50e-01 88.6% 56.4%
4959178 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.54 36.0 3.16e-01 70.0% 97.5%
3258054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 3.40e-01 88.6% 69.0%
3875879 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 35.0 2.72e-01 70.0% 66.9%
3601982 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 37.0 2.40e-01 78.6% 39.7%
3484671 3433.1.1.0 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.52 30.0 3.44e-01 77.1% 80.0%
3390184 206.1.1.55 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.52 40.0 2.63e-01 90.0% 87.5%
344114 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.50 36.0 3.08e-01 77.1% 66.9%