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MK203841.1__AZS06442.1__Henu1_6__00006

Bact-Vir

MK203841.1__AZS06442.1__Henu1_6__00006

Identity

Accession:
MK203841 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 112-178_216-276
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mswD01 1.10.1320.10 Mainly Alpha › Orthogonal Bundle › T7 RNA polymerase; domain 1 › DNA-directed RNA polymerase, N-terminal domain 0.86 74.0 5.31e-01 88.3% 44.8%
3zmdA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 44.0 4.15e-01 86.7% 56.8%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 39.0 4.65e-01 85.9% 91.6%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 43.0 4.45e-01 85.9% 72.5%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.64 43.0 5.07e-01 80.5% 100.0%
2ns0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 40.0 4.71e-01 86.7% 100.0%
3g3sA01 3.40.630.110 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › GNAT acetyltransferase-like 0.61 29.0 3.09e-01 75.8% 48.3%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.61 33.0 3.40e-01 84.4% 54.6%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 46.0 4.70e-01 85.2% 81.9%
3ghyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 37.0 3.83e-01 88.3% 64.8%
5w1aB01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 28.0 3.36e-01 79.7% 72.0%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 4.30e-01 84.4% 87.4%
3rsnA00 3.90.980.20 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › 0.54 44.0 4.07e-01 86.7% 73.9%
6todA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 37.0 2.82e-01 71.1% 62.8%
6ko5A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 36.0 2.74e-01 71.1% 65.1%
4f52C02 3.30.230.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Cullin; Chain C, Domain 2 0.50 43.0 4.01e-01 90.6% 84.3%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2987353 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.87 74.0 5.66e-01 88.3% 55.4%
3672395 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.87 74.0 5.55e-01 88.3% 63.6%
3195871 101.1.21.0 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.82 77.0 4.71e-01 100.0% 59.0%
4997952 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 46.0 5.57e-01 81.2% 92.9%
3280969 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.72 49.0 5.44e-01 93.0% 88.0%
3209919 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.72 48.0 5.36e-01 83.6% 87.0%
3328714 101.1.21.2 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › PF29140 0.72 67.0 5.09e-01 100.0% 52.5%
3580866 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.70 52.0 5.40e-01 87.5% 83.3%
3830291 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.68 42.0 2.91e-01 85.2% 19.8%
3485400 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 5.73e-01 85.9% 99.0%
3597631 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 4.38e-01 90.6% 44.9%
3702328 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 3.68e-01 85.9% 76.8%
5044477 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 5.06e-01 85.9% 93.0%
3738271 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.64 49.0 5.23e-01 87.5% 91.8%
3587045 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.64 46.0 3.45e-01 73.4% 62.0%
3383835 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.63 43.0 4.41e-01 85.2% 72.5%
4017175 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.63 50.0 3.99e-01 96.9% 43.3%
3542800 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.63 47.0 3.76e-01 92.2% 39.6%
5077356 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 4.42e-01 86.7% 72.0%
3801946 101.1.2.462 alpha arrays › HTH › HTH › winged helix domain › DUF7647 0.61 49.0 4.63e-01 85.2% 87.7%
3493601 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.61 50.0 5.32e-01 100.0% 100.0%
3592490 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 5.07e-01 82.8% 100.0%
3323745 101.1.2.462 alpha arrays › HTH › HTH › winged helix domain › DUF7647 0.61 54.0 4.47e-01 97.7% 80.9%
3712062 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 5.04e-01 84.4% 93.9%
3608304 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 40.0 4.33e-01 82.0% 80.9%
422747 101.1.2.186 alpha arrays › HTH › HTH › winged helix domain › ASH2L-like_WH 0.58 43.0 4.65e-01 85.2% 94.3%
3960575 610.4.1.0 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain 0.57 40.0 3.80e-01 71.9% 66.7%
4109895 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.56 39.0 4.23e-01 93.8% 90.0%
3812207 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 4.64e-01 80.5% 100.0%
3705963 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 29.0 3.22e-01 70.3% 60.0%
3772154 101.1.2.11 alpha arrays › HTH › HTH › winged helix domain › IRF 0.56 44.0 4.53e-01 85.9% 99.2%
4188764 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.55 28.0 2.92e-01 77.3% 49.2%
3186578 101.38.1.2 alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › DUF7721 0.55 39.0 3.80e-01 72.7% 86.4%
3926186 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 37.0 2.72e-01 74.2% 59.7%
3684904 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 46.0 4.19e-01 100.0% 77.6%
D2 high residues 472-553
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00940.25 best RNA_pol 86.2 3.20e-24 98.8% 16.7%
D3 medium residues 1-62
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hdlA00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.67 41.0 4.32e-01 96.8% 69.1%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 56.0 5.37e-01 91.9% 87.3%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 3.93e-01 83.9% 65.9%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 46.0 4.33e-01 96.8% 66.2%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2987353 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.95 86.0 5.43e-01 95.2% 24.0%
5044999 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.74 51.0 4.13e-01 79.0% 37.1%
4981851 140.1.1.7 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.67 51.0 3.63e-01 82.3% 27.6%
3955949 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.67 47.0 3.51e-01 75.8% 29.7%
4573344 140.1.1.4 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 0.62 47.0 3.53e-01 80.6% 34.0%
3720277 140.1.1.0 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.62 49.0 3.92e-01 85.5% 44.2%
4611879 140.1.1.4 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 0.61 41.0 3.12e-01 75.8% 30.7%
4484205 140.1.1.7 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.61 45.0 3.38e-01 79.0% 32.9%
3987419 140.1.1.7 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.56 40.0 3.27e-01 75.8% 75.7%
D4 medium residues 63-111_277-291
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rwlA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.66 45.0 2.76e-01 71.9% 15.6%
4o92A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 40.0 3.50e-01 76.6% 71.4%
D5 medium residues 292-376_429-471
PDB
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2387757 4970.1.1.4 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RPOL_N 0.99 97.0 8.48e-01 100.0% 96.6%
3785885 4970.1.1.4 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RPOL_N 0.92 89.0 8.08e-01 100.0% 99.4%
3269910 4970.1.1.4 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RPOL_N 0.92 88.0 8.04e-01 99.2% 97.5%
4020894 4970.1.1.4 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RPOL_N 0.92 89.0 7.39e-01 100.0% 91.0%
3301000 4970.1.1.4 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RPOL_N 0.91 87.0 7.37e-01 99.2% 98.5%
3550496 4970.1.1.4 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RPOL_N 0.91 88.0 7.48e-01 100.0% 96.8%
3743723 4970.1.1.4 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RPOL_N 0.91 88.0 7.92e-01 100.0% 97.6%
4026154 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.91 88.0 7.71e-01 100.0% 100.0%
3213952 4970.1.1.4 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › RPOL_N 0.90 87.0 7.47e-01 100.0% 98.9%
3623437 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.90 87.0 7.17e-01 100.0% 98.0%
4646287 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.87 83.0 7.17e-01 100.0% 96.8%
4079009 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.86 82.0 7.35e-01 98.4% 99.4%
4553377 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.85 82.0 7.28e-01 100.0% 97.6%
3650957 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.85 81.0 6.70e-01 100.0% 98.6%
3328713 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.84 79.0 6.55e-01 100.0% 98.6%
4487139 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.83 79.0 7.02e-01 99.2% 98.2%
4068023 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.82 78.0 7.45e-01 100.0% 97.2%
3684638 4970.1.1.6 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DA1-like 0.81 77.0 6.63e-01 99.2% 99.5%
3701465 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.74 68.0 6.17e-01 96.1% 89.1%
3683744 4970.1.1.6 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DA1-like 0.72 61.0 6.45e-01 89.8% 97.4%
D6 medium residues 377-428
PDB