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MK203850.3__AZS06523.1__X__00020
Bact-VirMK203850.3__AZS06523.1__X__00020
Identity
- Accession:
- MK203850 ↗
- Kingdom:
- phage
Quality
89.8
mean pLDDT
Taxonomy
TaxID: 2492447
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-142
Domain cluster:
rep: MW291508.1__QQM14852.1__X__00028__D32-129
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gefA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.79 | 61.0 | 6.52e-01 | 98.6% | 92.5% |
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.79 | 64.0 | 6.76e-01 | 99.3% | 94.4% |
| 1ob8A00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.75 | 60.0 | 6.51e-01 | 100.0% | 99.2% |
| 1rznA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.74 | 69.0 | 6.77e-01 | 100.0% | 99.3% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.72 | 45.0 | 5.45e-01 | 75.0% | 95.6% |
| 2ostD00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.69 | 56.0 | 5.81e-01 | 100.0% | 91.0% |
| 1tx3D00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.68 | 55.0 | 4.54e-01 | 85.0% | 75.0% |
| 1b96A00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.68 | 55.0 | 4.57e-01 | 85.7% | 65.6% |
| 1dmuA00 | 3.40.600.20 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Restriction endonuclease BglI | 0.67 | 57.0 | 4.41e-01 | 90.7% | 70.9% |
| 3ndhA00 | 3.40.600.30 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › | 0.66 | 55.0 | 4.77e-01 | 90.0% | 68.2% |
| 6p4wB01 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.65 | 49.0 | 5.40e-01 | 98.6% | 99.1% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.64 | 33.0 | 3.91e-01 | 99.3% | 69.4% |
| 3fovA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 43.0 | 4.92e-01 | 72.9% | 98.0% |
| 4da2A02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 53.0 | 5.18e-01 | 93.6% | 96.1% |
| 2b7uA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.60 | 42.0 | 4.00e-01 | 72.9% | 61.3% |
| 4lqeA00 | 3.40.1350.140 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › MepB-like | 0.59 | 49.0 | 4.85e-01 | 89.3% | 96.6% |
| 1y88A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 48.0 | 5.09e-01 | 92.9% | 98.4% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.57 | 49.0 | 3.75e-01 | 92.9% | 70.5% |
| 2k6hA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.57 | 41.0 | 3.87e-01 | 73.6% | 60.9% |
| 4q6lA00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.57 | 38.0 | 3.93e-01 | 90.7% | 70.4% |
| 5dynA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 38.0 | 4.22e-01 | 72.1% | 89.6% |
| 1tt5C01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 52.0 | 3.96e-01 | 100.0% | 83.1% |
| 3l0aA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.56 | 42.0 | 3.39e-01 | 77.1% | 59.8% |
| 4rcmB00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.56 | 39.0 | 3.72e-01 | 70.0% | 89.9% |
| 2xi5A00 | 3.40.91.60 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.55 | 45.0 | 4.16e-01 | 90.7% | 66.8% |
| 2yb1A01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.55 | 46.0 | 4.03e-01 | 89.3% | 93.4% |
| 4p22A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 51.0 | 4.33e-01 | 100.0% | 79.4% |
| 3ktnA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 50.0 | 3.76e-01 | 100.0% | 83.2% |
| 5l4lA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 45.0 | 3.60e-01 | 90.7% | 94.2% |
| 1i74A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.52 | 40.0 | 4.29e-01 | 80.0% | 95.0% |
| 1r0sA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 38.0 | 3.94e-01 | 91.4% | 81.1% |
| 3n2qA02 | 3.30.300.190 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.51 | 36.0 | 3.86e-01 | 72.1% | 99.1% |
| 3devA02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.51 | 37.0 | 4.03e-01 | 83.6% | 92.2% |
| 7mi4A01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.50 | 37.0 | 3.35e-01 | 77.1% | 59.0% |
| 4wfqA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.50 | 45.0 | 4.07e-01 | 100.0% | 93.8% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4260673 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.79 | 67.0 | 6.82e-01 | 100.0% | 90.6% |
| 5028193 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.77 | 64.0 | 6.79e-01 | 100.0% | 97.6% |
| 5004397 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.77 | 72.0 | 6.83e-01 | 99.3% | 99.4% |
| 4940109 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.77 | 63.0 | 6.66e-01 | 97.1% | 97.6% |
| 4149106 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.76 | 62.0 | 6.35e-01 | 100.0% | 88.9% |
| 5010105 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.76 | 62.0 | 6.52e-01 | 100.0% | 96.0% |
| 4942264 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.75 | 63.0 | 6.65e-01 | 98.6% | 99.2% |
| 4957206 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.74 | 66.0 | 6.72e-01 | 98.6% | 97.8% |
| 4357158 | 2008.1.1.13 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecU | 0.74 | 68.0 | 6.31e-01 | 99.3% | 81.1% |
| 5016968 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.73 | 64.0 | 6.52e-01 | 100.0% | 96.3% |
| 5019662 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.72 | 67.0 | 6.45e-01 | 98.6% | 89.0% |
| 4362615 | 2008.1.1.141 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 | 0.70 | 50.0 | 5.52e-01 | 98.6% | 89.6% |
| 5081637 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 58.0 | 5.76e-01 | 87.9% | 97.9% |
| 4927134 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.69 | 64.0 | 6.14e-01 | 97.1% | 98.1% |
| 4350516 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.66 | 47.0 | 5.33e-01 | 72.9% | 100.0% |
| 1145719 | 2008.1.1.62 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ThaI | 0.66 | 55.0 | 4.81e-01 | 90.0% | 69.9% |
| 4223955 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.65 | 47.0 | 5.03e-01 | 73.6% | 93.3% |
| 4651783 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.65 | 46.0 | 4.76e-01 | 73.6% | 85.0% |
| 4329875 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.63 | 45.0 | 4.78e-01 | 74.3% | 92.8% |
| 4021333 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 57.0 | 4.44e-01 | 100.0% | 63.0% |
| 4021238 | 2008.1.1.99 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 | 0.62 | 56.0 | 4.57e-01 | 100.0% | 71.9% |
| 3205620 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 57.0 | 5.40e-01 | 100.0% | 86.7% |
| 3594135 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.62 | 44.0 | 5.06e-01 | 72.1% | 100.0% |
| 4935732 | 2008.1.1.165 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_MjaI | 0.62 | 46.0 | 5.11e-01 | 100.0% | 99.1% |
| 4541404 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 55.0 | 5.57e-01 | 98.6% | 97.9% |
| 4260603 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.61 | 53.0 | 5.07e-01 | 93.6% | 90.6% |
| 4155974 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.60 | 52.0 | 5.13e-01 | 93.6% | 97.3% |
| 3430819 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.60 | 43.0 | 3.40e-01 | 73.6% | 36.8% |
| 5066637 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.60 | 53.0 | 5.15e-01 | 95.7% | 95.5% |
| 3172841 | 2003.1.9.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins | 0.59 | 54.0 | 3.76e-01 | 100.0% | 89.1% |
| 5044073 | 2008.1.1.11 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SfsA | 0.59 | 53.0 | 4.75e-01 | 96.4% | 93.2% |
| 4046364 | 7503.1.1.7 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LpoB | 0.58 | 39.0 | 3.97e-01 | 90.0% | 68.1% |
| 3636289 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 48.0 | 4.11e-01 | 100.0% | 54.5% |
| 5078094 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 43.0 | 4.67e-01 | 90.0% | 94.7% |
| 3685990 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 47.0 | 4.39e-01 | 91.4% | 93.9% |
| 4162930 | 2002.1.1.102 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP | 0.55 | 46.0 | 4.06e-01 | 89.3% | 98.0% |
| 4014619 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 43.0 | 4.04e-01 | 90.0% | 100.0% |
| 3716134 | 7575.1.1.0 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like | 0.52 | 47.0 | 3.79e-01 | 100.0% | 70.9% |
| 3573532 | 2007.15.1.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › MAP3K_TRAF_bd | 0.52 | 41.0 | 4.17e-01 | 92.1% | 87.4% |
| 4430901 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.52 | 37.0 | 4.04e-01 | 81.4% | 93.6% |
| 4041870 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.51 | 39.0 | 4.22e-01 | 83.6% | 95.0% |
| 3972879 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.50 | 28.0 | 3.25e-01 | 99.3% | 74.0% |
| 4174479 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.50 | 37.0 | 3.98e-01 | 83.6% | 92.2% |
| 3940281 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 36.0 | 3.41e-01 | 73.6% | 92.4% |