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MK224497.1__QAU04986.1__Henu3_gp42__00039

Bact-Vir

MK224497.1__QAU04986.1__Henu3_gp42__00039

Identity

Accession:
MK224497 ↗
Kingdom:
phage

Quality

62.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fionnbharthvirus› Mycobacterium_phage_Henu3

TaxID: 2492961

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 74-111
PDB
Domain cluster: rep: NC_051590.1__YP_009950394.1__I5G69_gp83__00053__D8-45
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24128.2 best Phage_zn_bind_4 43.2 4.90e-11 100.0% 57.1%
D2 medium residues 119-161
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.74 64.0 3.84e-01 100.0% 20.5%
2edgA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.71 59.0 4.28e-01 100.0% 86.9%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.70 60.0 4.24e-01 100.0% 31.4%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.69 56.0 4.22e-01 100.0% 45.2%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 56.0 3.75e-01 100.0% 51.9%
1x9zA01 3.30.1540.20 Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain 0.66 47.0 3.79e-01 79.1% 89.2%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 56.0 3.37e-01 100.0% 87.0%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.64 44.0 3.76e-01 74.4% 41.8%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 48.0 4.24e-01 88.4% 64.3%
1hxnA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.63 53.0 3.46e-01 100.0% 67.6%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.63 52.0 3.97e-01 97.7% 97.3%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 46.0 3.79e-01 83.7% 48.9%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.62 44.0 3.26e-01 76.7% 89.3%
2dfuA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.62 50.0 5.00e-01 97.7% 97.7%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.14e-01 100.0% 59.5%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.61 46.0 4.16e-01 88.4% 81.8%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 46.0 2.90e-01 93.0% 28.7%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.61 47.0 4.43e-01 88.4% 83.3%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.61 50.0 3.38e-01 100.0% 75.4%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 49.0 2.97e-01 100.0% 92.3%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.59 45.0 3.84e-01 90.7% 76.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.31e-01 100.0% 89.2%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 41.0 3.06e-01 76.7% 87.9%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 3.68e-01 100.0% 84.4%
4fo0A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 41.0 2.92e-01 86.0% 65.1%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 41.0 3.37e-01 86.0% 96.6%
4nkbB02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 43.0 3.60e-01 100.0% 47.8%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 42.0 2.70e-01 97.7% 51.7%
1n7oA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 38.0 3.26e-01 86.0% 64.7%
4a17E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 36.0 3.02e-01 76.7% 78.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3521805 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.77 54.0 4.47e-01 74.4% 44.0%
3623430 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.76 64.0 4.34e-01 100.0% 26.2%
5056706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.77e-01 100.0% 88.0%
3407060 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.70 60.0 4.05e-01 100.0% 27.3%
4029401 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.70 57.0 3.85e-01 100.0% 30.3%
4982334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 5.41e-01 100.0% 87.3%
3524786 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.68 57.0 3.79e-01 100.0% 68.7%
3858787 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.67 56.0 3.76e-01 100.0% 24.3%
3326520 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.66 45.0 3.84e-01 72.1% 41.3%
3972888 5.1.4.163 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vgb_lyase 0.66 56.0 3.42e-01 100.0% 88.7%
5068097 2484.1.1.71 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RACo_C_ter 0.66 48.0 2.78e-01 81.4% 11.9%
3453949 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 55.0 3.34e-01 100.0% 17.2%
3455792 5.1.4.319 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st 0.66 56.0 3.39e-01 100.0% 87.3%
3967552 375.1.1.71 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2387 0.66 47.0 4.67e-01 79.1% 100.0%
5023740 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.10e-01 100.0% 94.0%
5002449 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.95e-01 100.0% 87.3%
3817530 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.65 53.0 3.32e-01 97.7% 28.2%
3306543 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.65 45.0 3.88e-01 72.1% 44.3%
3806421 247.1.1.38 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.64 43.0 3.92e-01 72.1% 47.7%
4989647 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.64 47.0 4.49e-01 86.0% 78.2%
4478971 4.1.1.174 ↗ beta barrels › SH3 › SH3 › SH3 › DUF951 0.64 50.0 4.63e-01 100.0% 86.2%
3938259 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.64 52.0 3.64e-01 100.0% 27.3%
3914165 5.1.4.269 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.64 52.0 3.13e-01 100.0% 78.1%
3937459 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 51.0 4.08e-01 97.7% 91.0%
None — 0.63 52.0 3.32e-01 100.0% 62.0%
3400449 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 49.0 3.28e-01 83.7% 23.4%
4891048 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.63 53.0 3.04e-01 100.0% 72.0%
3185844 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 44.0 3.83e-01 74.4% 47.1%
3926070 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 53.0 3.15e-01 100.0% 76.2%
3405033 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 52.0 3.10e-01 100.0% 73.6%
None — 0.62 43.0 2.56e-01 76.7% 40.3%
3568386 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.62 43.0 2.71e-01 76.7% 57.7%
1921564 101.1.2.237 ↗ alpha arrays › HTH › HTH › winged helix domain › ThcOx 0.62 45.0 3.45e-01 81.4% 35.7%
3919221 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.62 46.0 3.92e-01 83.7% 54.7%
None — 0.62 47.0 3.00e-01 88.4% 48.1%
4966534 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.71e-01 100.0% 88.0%
3993002 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.61 49.0 3.28e-01 100.0% 52.6%
3448051 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 47.0 3.06e-01 95.3% 45.3%
3263503 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.61 41.0 3.59e-01 72.1% 44.0%
3704121 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.60 43.0 4.07e-01 83.7% 70.7%
4030337 5.1.4.81 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BING4CT 0.60 50.0 2.93e-01 100.0% 48.2%
3389476 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.60 42.0 2.93e-01 76.7% 20.0%
3345737 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.60 49.0 3.03e-01 100.0% 68.1%
3619889 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.60 40.0 3.51e-01 72.1% 42.9%
4098275 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.60 41.0 3.46e-01 74.4% 80.0%
4021107 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 48.0 3.05e-01 95.3% 40.0%
4016640 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 49.0 2.96e-01 100.0% 77.7%
3400388 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.59 46.0 4.08e-01 88.4% 69.2%
3483289 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.24e-01 100.0% 93.8%
4297274 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.58 48.0 2.86e-01 100.0% 39.2%
3170306 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.58 45.0 3.38e-01 95.3% 81.5%
4979128 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.58 44.0 2.82e-01 93.0% 41.4%
3796352 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 44.0 3.95e-01 90.7% 86.2%
4456820 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.55 41.0 3.39e-01 81.4% 73.8%