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MK240575.1AZU97390.1X__00030

Bact-Vir

MK240575.1__AZU97390.1__X__00030

Identity

Accession:: MK240575 ↗
Kingdom:: phage

Quality

45.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermobifida_phage_P318

TaxID: 2500138

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 355-513

PDB

Domain cluster: rep: ON529866.1__UTC30100.1__MAINES_00610__00061__D285-468

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20155.5 best	TMP_3	104.6	7.70e-30	98.7%	80.2%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5oklA01	1.10.246.10	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.54	32.0	3.89e-01	86.2%	92.1%
3d8lA00	1.10.8.940	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12	0.51	27.0	3.42e-01	75.5%	86.8%
6ks6B02	3.30.260.10	Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain	0.51	33.0	3.68e-01	94.3%	82.0%
5xs2B02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.51	36.0	3.93e-01	72.3%	88.6%
3ihvA03	1.25.40.900	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.50	36.0	3.83e-01	75.5%	84.2%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3164789	159.1.2.5 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3	0.86	79.0	7.82e-01	100.0%	92.1%
3963765	159.1.2.5 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3	0.82	77.0	7.19e-01	100.0%	82.6%
4032310	159.1.2.6 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail	0.76	53.0	5.50e-01	100.0%	76.0%
3980797	5073.1.1.4 ↗	alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C,Cation_ATPase_N	0.58	50.0	3.64e-01	93.1%	81.6%
1746268	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.56	46.0	4.51e-01	100.0%	80.2%

D2 high residues 1270-1328_1522-1566

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1k8kD01	3.30.1460.20	Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, ›	0.52	37.0	3.30e-01	74.0%	66.2%
2w2iC00	2.60.120.650	Mainly Beta › Sandwich › Jelly Rolls › Cupin	0.51	40.0	2.86e-01	81.7%	35.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4863778	3156.1.1.8 ↗	beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_2	0.54	41.0	3.44e-01	80.8%	70.3%
3260796	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.53	40.0	2.89e-01	81.7%	34.7%

D3 medium residues 19-74

PDB

D4 medium residues 571-660

PDB

D5 medium residues 711-767

PDB

D6 medium residues 1392-1415_1433-1476

PDB

D7 medium residues 1651-1784

PDB

Domain cluster: rep: OR420741.1__WOZ55670.1__CRP118_gp39__00039__D1-140

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05257.23 best	CHAP	40.6	4.10e-10	70.2%	97.5%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2k3aA01	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.74	53.0	6.03e-01	77.6%	97.0%
4cshA00	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.74	70.0	6.46e-01	100.0%	94.5%
6gbuD00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.66	31.0	4.52e-01	100.0%	96.9%
1wfwA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.62	32.0	4.29e-01	70.1%	91.9%
3ntkA02	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.61	35.0	4.42e-01	79.9%	93.8%
2dmoA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.60	29.0	3.98e-01	83.6%	91.2%
3cz8A02	3.10.50.10	Alpha Beta › Roll › Chitinase A; domain 3 ›	0.56	21.0	3.06e-01	73.1%	75.4%
1jnrB02	6.20.260.10	Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain	0.55	18.0	2.25e-01	73.9%	41.0%
1ci3M02	2.40.50.100	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	0.55	20.0	2.89e-01	78.4%	70.7%
2ra2B00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.53	23.0	3.20e-01	72.4%	87.9%
2fjrA02	2.10.109.10	Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A	0.53	35.0	3.81e-01	79.1%	79.6%
3ci0J02	2.10.70.20	Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains	0.52	19.0	3.08e-01	73.1%	92.0%
3k2tA01	3.30.505.50	Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain	0.50	19.0	3.10e-01	94.8%	100.0%

ECOD (29)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4034057	219.1.1.28 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP	0.78	58.0	6.48e-01	82.8%	97.1%
3964422	219.1.1.0 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases	0.75	72.0	6.70e-01	100.0%	88.1%
184711	219.1.1.28 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP	0.73	54.0	5.11e-01	83.6%	65.2%
153248	219.1.1.40 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AmiA-like	0.70	65.0	5.33e-01	100.0%	97.0%
3393297	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.70	37.0	4.76e-01	82.8%	87.5%
3503815	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.66	37.0	4.57e-01	80.6%	87.1%
3622055	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.65	37.0	4.53e-01	82.8%	87.1%
3389175	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.65	38.0	4.56e-01	81.3%	86.7%
3393360	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.64	39.0	4.25e-01	85.1%	71.3%
3911238	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.64	37.0	4.56e-01	81.3%	89.4%
3512419	4.1.1.92 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_9	0.64	31.0	3.87e-01	100.0%	74.1%
3407820	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.64	36.0	4.43e-01	81.3%	87.1%
3623785	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.64	31.0	4.21e-01	100.0%	86.7%
3577505	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.63	36.0	4.36e-01	85.8%	87.1%
3787441	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.63	32.0	3.88e-01	96.3%	73.3%
3482680	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.63	30.0	4.31e-01	97.0%	95.4%
3561707	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.63	39.0	4.48e-01	85.1%	83.0%
3389311	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.62	40.0	4.59e-01	84.3%	87.0%
3514906	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.62	40.0	3.58e-01	91.8%	46.3%
3227565	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.62	28.0	4.26e-01	97.8%	100.0%
3566631	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.62	31.0	3.96e-01	99.3%	81.2%
4218488	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.61	31.0	3.94e-01	99.3%	81.2%
3990071	219.1.1.28 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP	0.61	56.0	5.59e-01	98.5%	96.4%
3911241	4.1.1.9 ↗	beta barrels › SH3 › SH3 › SH3 › TUDOR	0.60	39.0	4.41e-01	100.0%	88.0%
3313139	4.1.1.42 ↗	beta barrels › SH3 › SH3 › SH3 › Agenet	0.55	43.0	3.97e-01	82.8%	73.1%
4032161	809.1.1.0 ↗	a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP	0.53	27.0	3.54e-01	88.1%	96.9%
3642926	4.1.1.42 ↗	beta barrels › SH3 › SH3 › SH3 › Agenet	0.52	41.0	3.67e-01	82.8%	80.0%
3829476	4.1.1.42 ↗	beta barrels › SH3 › SH3 › SH3 › Agenet	0.51	40.0	3.63e-01	82.8%	80.6%
3482559	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.50	36.0	3.39e-01	73.9%	90.0%