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MK240575.1__AZU97397.1__X__00037

Bact-Vir

MK240575.1__AZU97397.1__X__00037

Identity

Accession:
MK240575 ↗
Kingdom:
phage

Quality

73.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermobifida_phage_P318

TaxID: 2500138

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-123
PDB
Domain cluster: rep: MH744420.1__AYD81622.1__SEA_KROMP_21__00021__D3-89
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e8vA00 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.71 43.0 5.05e-01 80.8% 87.8%
1svbA04 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 40.0 4.41e-01 88.3% 77.1%
6tqdC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 43.0 4.73e-01 94.2% 89.6%
4oq1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 4.90e-01 92.5% 89.9%
7esdB01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 41.0 4.53e-01 90.0% 89.1%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 38.0 4.01e-01 70.8% 69.1%
2ofqA01 2.60.40.2500 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 36.0 4.14e-01 97.5% 80.9%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 4.31e-01 93.3% 86.0%
1aozA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.57 44.0 3.62e-01 80.8% 86.1%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.57 40.0 3.79e-01 71.7% 74.3%
4f7kA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.57 43.0 4.44e-01 79.2% 89.5%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.57 37.0 4.13e-01 82.5% 85.7%
5e4sA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 4.32e-01 93.3% 92.6%
1bq5A02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.56 45.0 4.06e-01 87.5% 97.6%
3g5wA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.55 43.0 3.91e-01 84.2% 88.3%
1pmiA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 34.0 3.46e-01 73.3% 61.3%
2vm9A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 39.0 3.58e-01 86.7% 56.5%
4cucA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 4.38e-01 87.5% 87.1%
3gm8A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 4.49e-01 93.3% 91.8%
1zpuA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.54 43.0 3.77e-01 85.0% 83.9%
2w91A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 4.11e-01 97.5% 86.4%
2uzxB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 3.66e-01 94.2% 67.8%
1sefA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 32.0 3.12e-01 71.7% 51.1%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.95e-01 93.3% 83.2%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 32.0 3.72e-01 84.2% 89.9%
2uxtA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 45.0 4.17e-01 96.7% 92.5%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.51 33.0 3.72e-01 70.8% 89.4%
3kq4B03 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.50 33.0 3.40e-01 82.5% 69.6%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 4.18e-01 99.2% 91.1%
2o8qA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 30.0 3.08e-01 75.8% 57.4%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 37.0 3.89e-01 84.2% 87.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4960000 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.71 46.0 5.28e-01 80.8% 87.8%
5063985 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 40.0 4.78e-01 80.8% 92.5%
3603529 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 43.0 4.48e-01 94.2% 71.1%
2880596 11.1.1.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CagX 0.62 38.0 4.01e-01 97.5% 66.4%
5041030 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 46.0 4.84e-01 86.7% 84.5%
3526593 2007.9.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › IL17_R_N 0.61 38.0 4.43e-01 89.2% 88.2%
3408484 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.61 49.0 4.68e-01 86.7% 100.0%
2713809 3156.1.1.8 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_2 0.60 40.0 4.44e-01 76.7% 84.4%
5010180 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 43.0 4.09e-01 84.2% 62.8%
3999453 11.1.1.818 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TPPC8_2nd 0.59 44.0 4.27e-01 77.5% 82.2%
4010247 11.1.1.39 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_1 0.59 44.0 4.63e-01 96.7% 87.6%
1736601 11.1.5.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_2 0.58 40.0 4.33e-01 75.8% 85.0%
3235443 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 38.0 4.28e-01 94.2% 92.2%
4992169 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.50e-01 87.5% 84.9%
5026837 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 37.0 4.15e-01 80.8% 90.0%
3966955 3156.1.1.8 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_2 0.55 42.0 3.98e-01 80.0% 97.2%
4990961 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 4.32e-01 96.7% 94.7%
3628729 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 45.0 2.77e-01 92.5% 33.6%
3370751 3156.1.1.4 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase 0.53 44.0 4.23e-01 87.5% 79.3%
5054864 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 4.48e-01 94.2% 92.4%
4094534 3156.1.1.4 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase 0.53 44.0 3.74e-01 90.8% 84.0%
3316064 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 46.0 4.41e-01 96.7% 92.9%
3491151 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 46.0 4.30e-01 96.7% 90.0%
4547846 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.52 38.0 3.10e-01 75.8% 73.0%
4319764 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.52 30.0 3.10e-01 81.7% 59.1%
4201000 3156.1.1.4 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase 0.52 44.0 3.79e-01 94.2% 84.5%
5037566 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 37.0 3.95e-01 82.5% 84.8%
3611479 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 35.0 3.78e-01 76.7% 84.0%
4589741 10.12.1.145 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PKHD_C 0.51 37.0 3.09e-01 76.7% 74.2%
5009476 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 35.0 3.91e-01 71.7% 98.9%
3321290 11.1.1.902 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_GEX2_N 0.51 39.0 4.04e-01 96.7% 87.0%
2418779 10.2.1.60 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › STIV_penton_2nd 0.51 32.0 3.63e-01 70.8% 86.4%
3671479 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 38.0 3.51e-01 86.7% 61.9%
4978954 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.97e-01 88.3% 80.8%
D2 high residues 211-314
PDB
D3 medium residues 127-205
PDB
Domain cluster: representative