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MK241539.2__AZU97342.1__X__00029

Bact-Vir

MK241539.2__AZU97342.1__X__00029

Identity

Accession:
MK241539 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alteromonas_phage_P24

TaxID: 2500137

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-73
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kihC01 2.20.25.510 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.80 41.0 5.32e-01 76.9% 94.1%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.73 43.0 5.22e-01 80.0% 97.4%
1c48A00 2.40.50.70 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 42.0 4.14e-01 93.8% 59.4%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 36.0 3.69e-01 93.8% 57.1%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 36.0 3.52e-01 98.5% 54.2%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 34.0 3.50e-01 95.4% 60.0%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.57 40.0 2.94e-01 95.4% 26.7%
2jmcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 37.0 3.53e-01 98.5% 57.1%
3fvzA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 41.0 2.68e-01 86.2% 82.1%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 35.0 3.33e-01 98.5% 54.4%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 26.0 2.77e-01 80.0% 50.9%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.53 44.0 3.88e-01 100.0% 63.7%
3l2hA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 37.0 3.00e-01 78.5% 81.0%
1hp1A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 43.0 2.80e-01 95.4% 64.6%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 43.0 2.65e-01 90.8% 98.7%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 38.0 3.39e-01 76.9% 78.0%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 37.0 2.88e-01 81.5% 75.7%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 36.0 3.35e-01 95.4% 55.4%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.51 35.0 3.57e-01 81.5% 72.3%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 45.0 2.71e-01 100.0% 60.2%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 37.0 3.63e-01 96.9% 71.6%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 44.0 3.86e-01 96.9% 67.7%
4paaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 45.0 3.01e-01 100.0% 59.6%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 43.0 3.53e-01 98.5% 62.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3926416 1.1.1.19 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.68 40.0 3.31e-01 75.4% 33.6%
4393186 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.62 46.0 4.67e-01 100.0% 81.5%
1830976 1068.1.1.1 ↗ few secondary structure elements › CRISPR-associated endonuclease Cpf1 nuclease domain › CRISPR-associated endonuclease Cpf1 nuclease domain › CRISPR-associated endonuclease Cpf1 nuclease domain › NUC 0.61 51.0 3.92e-01 98.5% 51.8%
4065466 220.1.1.150 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 0.57 46.0 4.31e-01 95.4% 71.2%
3668727 263.1.1.6 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › PF27048 0.54 31.0 2.93e-01 78.5% 42.4%
3520059 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 45.0 3.79e-01 100.0% 83.3%
3906424 220.1.1.49 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.52 45.0 3.58e-01 100.0% 56.4%
4030652 77.3.1.0 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.52 35.0 2.76e-01 70.8% 96.7%
3627795 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 4.12e-01 96.9% 75.3%
4959178 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.51 42.0 3.45e-01 90.8% 93.3%
3933335 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.51 39.0 2.32e-01 86.2% 11.4%
4264672 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 42.0 3.51e-01 90.8% 61.8%
D2 high residues 98-173
PDB
Domain cluster: rep: LT992259.1__SPL81321.1__X__00030__D122-199