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MK241539.2__QIV64697.1__X__00073

Bact-Vir

MK241539.2__QIV64697.1__X__00073

Identity

Accession:
MK241539 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alteromonas_phage_P24

TaxID: 2500137

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-58
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pf6A00 6.10.250.2290 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 49.0 4.74e-01 70.4% 63.3%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.66 49.0 4.22e-01 79.6% 100.0%
3clmA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 51.0 3.15e-01 87.0% 14.5%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.65 45.0 4.24e-01 72.2% 59.7%
7vkkB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 46.0 3.04e-01 81.5% 49.8%
2mgwA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.58 36.0 3.71e-01 81.5% 65.4%
1uyvA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.52 39.0 2.67e-01 90.7% 83.6%
3c3dA02 1.10.8.240 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain 0.51 34.0 3.02e-01 70.4% 86.4%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994233 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.87 69.0 6.01e-01 85.2% 57.5%
4375217 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.86 59.0 5.13e-01 81.5% 48.8%
None — 0.85 57.0 4.95e-01 70.4% 47.5%
3484058 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.83 57.0 4.88e-01 72.2% 45.9%
3246596 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.82 56.0 5.04e-01 72.2% 52.0%
3985544 101.1.11.65 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RepB-RCR_reg 0.81 59.0 5.88e-01 79.6% 76.4%
3586991 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.81 60.0 5.35e-01 81.5% 57.3%
5012232 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.80 63.0 6.34e-01 87.0% 85.5%
5045263 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.80 57.0 5.00e-01 79.6% 51.2%
4984124 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.80 54.0 5.15e-01 72.2% 60.0%
4946063 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.78 66.0 6.64e-01 94.4% 94.5%
3646563 101.1.11.3 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP 0.75 61.0 4.87e-01 90.7% 50.9%
4946062 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.75 58.0 5.97e-01 85.2% 90.0%
2409509 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.74 57.0 5.48e-01 85.2% 73.8%
5011906 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.74 56.0 5.65e-01 79.6% 78.2%
4980865 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.72 53.0 4.70e-01 79.6% 56.2%
5033202 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.71 59.0 5.02e-01 94.4% 57.8%
3807164 101.1.11.3 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP 0.69 55.0 5.51e-01 88.9% 92.7%
3991598 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.69 61.0 5.31e-01 98.1% 85.0%
4282585 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 56.0 4.75e-01 92.6% 72.9%
3769368 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.66 60.0 5.33e-01 100.0% 86.7%
3874841 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 51.0 4.81e-01 87.0% 90.8%
3757972 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 55.0 4.54e-01 96.3% 67.0%
3723486 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 48.0 4.67e-01 81.5% 96.7%
3894143 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 52.0 4.52e-01 90.7% 90.0%
3209663 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.62 44.0 3.79e-01 83.3% 47.1%
3886591 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 52.0 4.52e-01 92.6% 95.0%
4160448 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.59 49.0 2.91e-01 94.4% 23.9%
3264948 101.1.1.69 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_7 0.59 43.0 3.77e-01 85.2% 93.7%
3578543 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.59 47.0 4.56e-01 87.0% 93.3%
2074163 2484.1.1.32 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C 0.59 49.0 3.21e-01 94.4% 55.6%
3889817 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 51.0 4.40e-01 94.4% 81.2%
3484360 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 42.0 3.81e-01 77.8% 91.4%
5079550 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.68e-01 72.2% 81.5%
3596613 2486.1.1.0 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.56 42.0 2.56e-01 85.2% 14.5%
2486078 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.56 40.0 2.75e-01 77.8% 88.7%
4025976 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 40.0 3.86e-01 79.6% 78.3%