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MK249871.1__AZU97821.1__X__00016

Bact-Vir

MK249871.1__AZU97821.1__X__00016

Identity

Accession:
MK249871 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_LP.2

TaxID: 2500151

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-66
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2odkA00 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.90 67.0 7.39e-01 79.0% 100.0%
3hryA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.83 60.0 6.62e-01 75.8% 98.0%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.67 45.0 3.91e-01 71.0% 64.5%
3orgA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.65 47.0 3.66e-01 75.8% 37.3%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.64 41.0 3.33e-01 96.8% 34.5%
3pc3A03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 46.0 3.52e-01 80.6% 59.0%
3rosA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.61 42.0 2.70e-01 87.1% 16.4%
1pbjA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 45.0 3.67e-01 80.6% 68.9%
2yziB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 45.0 3.51e-01 82.3% 63.0%
2rc3C00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.59 45.0 3.57e-01 82.3% 66.4%
3fhmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.59 45.0 3.49e-01 82.3% 62.5%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.58 41.0 3.05e-01 74.2% 69.8%
1hkqA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.21e-01 72.6% 72.0%
3i4tA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.58 43.0 3.41e-01 83.9% 84.9%
4cooA03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 43.0 3.37e-01 83.9% 76.6%
2felA00 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.56 47.0 2.98e-01 95.2% 62.0%
7tchB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 36.0 2.46e-01 72.6% 80.2%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.53 32.0 2.85e-01 79.0% 39.4%
1o50A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 43.0 3.44e-01 98.4% 87.9%
6xgzE01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.90e-01 100.0% 56.1%
8hw4A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 2.76e-01 90.3% 63.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3954634 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.93 87.0 7.70e-01 100.0% 73.8%
3284279 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.92 65.0 7.47e-01 72.6% 100.0%
3385734 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.91 83.0 8.23e-01 98.4% 96.9%
4010815 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.91 67.0 7.40e-01 82.3% 96.0%
4992373 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.89 74.0 6.58e-01 88.7% 65.9%
4616210 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.88 71.0 7.50e-01 88.7% 96.4%
3970114 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.87 65.0 6.93e-01 82.3% 89.1%
3287302 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.85 69.0 6.66e-01 93.5% 77.1%
3979098 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.83 74.0 6.98e-01 100.0% 81.3%
3281080 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.80 63.0 6.38e-01 83.9% 91.7%
4115104 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.76 64.0 6.51e-01 100.0% 98.3%
4006742 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.75 65.0 6.44e-01 100.0% 93.8%
3953259 4267.1.1.0 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like 0.74 58.0 5.88e-01 82.3% 88.3%
3952396 4267.1.1.1 ↗ a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.69 63.0 6.04e-01 100.0% 97.1%
5056282 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.65 47.0 3.69e-01 77.4% 81.5%
4930759 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.65 47.0 3.64e-01 77.4% 82.2%
3931976 1075.4.1.9 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_tran+ABC_membrane 0.64 46.0 2.54e-01 100.0% 5.3%
4948416 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 43.0 3.32e-01 71.0% 40.8%
4994421 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 49.0 3.75e-01 83.9% 74.1%
4983375 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 47.0 3.78e-01 80.6% 67.0%
4989025 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 49.0 4.03e-01 87.1% 99.1%
5021086 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.60 44.0 3.32e-01 79.0% 63.0%
4967667 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.60 46.0 3.55e-01 82.3% 69.6%
5004289 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.60 45.0 3.58e-01 80.6% 69.6%
5049598 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.60 45.0 3.59e-01 82.3% 64.1%
4942800 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 45.0 3.64e-01 82.3% 67.5%
4937408 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 45.0 3.50e-01 80.6% 62.3%
3959587 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.59 43.0 3.43e-01 79.0% 68.5%
5078936 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 44.0 3.43e-01 80.6% 67.4%
4946883 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 45.0 3.58e-01 82.3% 66.7%
5024239 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 44.0 3.47e-01 80.6% 60.8%
4968391 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 44.0 3.40e-01 80.6% 69.3%
4991815 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.58 48.0 3.98e-01 98.4% 92.0%
4938732 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.58 43.0 3.36e-01 79.0% 76.3%
5033399 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.58 42.0 3.33e-01 79.0% 65.4%
4931067 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.57 43.0 3.38e-01 80.6% 63.8%
4995095 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.57 45.0 3.53e-01 85.5% 70.0%
5057720 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.57 43.0 3.52e-01 82.3% 71.7%
3853859 2004.1.1.8 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran,CFTR_R 0.57 48.0 3.08e-01 93.5% 52.0%
5069694 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.57 42.0 3.32e-01 80.6% 69.6%
3525340 2006.1.4.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Fcf1 0.56 37.0 2.85e-01 75.8% 27.1%
4947952 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.56 44.0 3.51e-01 85.5% 69.6%
5059207 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 43.0 3.54e-01 83.9% 68.7%
5010770 2002.3.1.3 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_57 0.56 47.0 2.81e-01 100.0% 13.0%
4939664 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 43.0 3.41e-01 85.5% 62.5%
4233929 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.54 37.0 2.64e-01 74.2% 75.1%
5013766 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 46.0 3.64e-01 100.0% 89.3%
3482158 2006.1.4.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Fcf1 0.54 36.0 2.73e-01 77.4% 25.3%
5039505 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.53 40.0 4.25e-01 83.9% 96.4%
3679010 1075.4.1.9 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_tran+ABC_membrane 0.53 48.0 2.57e-01 100.0% 57.4%
3237415 304.111.1.1 ↗ a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C 0.52 40.0 2.73e-01 98.4% 23.2%
3596718 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 45.0 2.94e-01 93.5% 89.4%
4982296 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.52 41.0 3.40e-01 95.2% 86.2%
4026832 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 39.0 2.67e-01 90.3% 50.3%
5070762 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 41.0 3.38e-01 93.5% 88.3%
3733162 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 43.0 3.09e-01 91.9% 94.3%
3549079 1075.4.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold 0.51 45.0 2.46e-01 98.4% 5.9%
3716110 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.50 39.0 2.93e-01 90.3% 81.1%
4978498 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.50 41.0 3.22e-01 90.3% 94.6%