←Back to structures
MK249871.1__AZU97828.1__X__00023
Bact-VirMK249871.1__AZU97828.1__X__00023
Identity
- Accession:
- MK249871 ↗
- Kingdom:
- phage
Quality
69.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-56
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.69 | 60.0 | 5.06e-01 | 96.3% | 88.8% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 59.0 | 5.79e-01 | 100.0% | 96.6% |
| 3jvoA00 | 1.10.3230.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein | 0.65 | 58.0 | 4.77e-01 | 100.0% | 66.7% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 55.0 | 4.68e-01 | 94.4% | 71.3% |
| 7y11B01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.64 | 47.0 | 4.51e-01 | 90.7% | 68.3% |
| 2o6yA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.63 | 50.0 | 3.49e-01 | 90.7% | 54.4% |
| 1xrsB02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.60 | 40.0 | 2.93e-01 | 70.4% | 36.9% |
| 2c5zA00 | 1.10.1740.100 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain | 0.59 | 45.0 | 3.93e-01 | 96.3% | 51.6% |
| 4xaaA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.58 | 49.0 | 3.28e-01 | 96.3% | 24.9% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 43.0 | 3.31e-01 | 81.5% | 51.3% |
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.56 | 48.0 | 3.38e-01 | 100.0% | 39.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3333688 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.75 | 53.0 | 3.46e-01 | 74.1% | 41.8% |
| 3419529 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.65 | 47.0 | 4.03e-01 | 83.3% | 46.7% |
| 4228716 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.59 | 49.0 | 3.74e-01 | 96.3% | 50.4% |
| 4367389 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.59 | 49.0 | 4.06e-01 | 92.6% | 84.2% |
| 3782437 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 46.0 | 3.92e-01 | 96.3% | 50.0% |
| 3482804 | 10.28.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 | 0.53 | 42.0 | 3.04e-01 | 85.2% | 48.3% |
| 3945351 | 605.1.1.128 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF485 | 0.52 | 44.0 | 3.78e-01 | 92.6% | 67.1% |