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MK249872.1__AZU97894.1__X__00021
Bact-VirMK249872.1__AZU97894.1__X__00021
Identity
- Accession:
- MK249872 ↗
- Kingdom:
- phage
Quality
78.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-33
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1i3oF00 | 1.10.1170.10 | Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A | 0.76 | 56.0 | 3.96e-01 | 75.8% | 26.9% |
| 1jj2Y00 | 2.20.25.30 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.73 | 58.0 | 4.57e-01 | 90.9% | 49.3% |
| 4ifdI02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 55.0 | 3.59e-01 | 84.8% | 20.1% |
| 2hf1A01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.70 | 52.0 | 4.58e-01 | 87.9% | 56.4% |
| 1vwxp00 | 2.20.25.30 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.69 | 53.0 | 3.97e-01 | 87.9% | 39.6% |
| 6gpkA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.69 | 55.0 | 3.97e-01 | 97.0% | 63.3% |
| 3k8rA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.68 | 51.0 | 4.21e-01 | 87.9% | 51.5% |
| 1yw5A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.67 | 48.0 | 3.95e-01 | 78.8% | 61.9% |
| 2cjgA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.67 | 51.0 | 3.36e-01 | 90.9% | 48.7% |
| 1z01A03 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.66 | 48.0 | 3.73e-01 | 84.8% | 41.0% |
| 2aklA01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.66 | 47.0 | 4.51e-01 | 87.9% | 65.1% |
| 4dnaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.65 | 51.0 | 3.17e-01 | 97.0% | 46.3% |
| 2pvjA01 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.63 | 45.0 | 2.77e-01 | 81.8% | 26.7% |
| 1xezA02 | 2.70.240.20 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/Hemolysin toxin, cytolysin domain | 0.62 | 48.0 | 2.78e-01 | 100.0% | 21.3% |
| 2nutB02 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.62 | 46.0 | 4.02e-01 | 93.9% | 51.6% |
| 3s8iA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.61 | 49.0 | 3.47e-01 | 97.0% | 46.8% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 47.0 | 3.60e-01 | 90.9% | 69.2% |
| 2nutA02 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.61 | 46.0 | 3.99e-01 | 93.9% | 60.7% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.61 | 45.0 | 3.74e-01 | 90.9% | 45.8% |
| 4f9cA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.60 | 43.0 | 2.75e-01 | 81.8% | 35.7% |
| 1m2vB03 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.60 | 44.0 | 3.92e-01 | 97.0% | 59.7% |
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.60 | 48.0 | 3.36e-01 | 100.0% | 55.0% |
| 3u50C02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.60 | 42.0 | 4.25e-01 | 78.8% | 74.3% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.60 | 44.0 | 2.82e-01 | 84.8% | 17.6% |
| 2k4xA01 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.60 | 44.0 | 4.43e-01 | 90.9% | 94.3% |
| 4zi8B01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.60 | 46.0 | 3.45e-01 | 100.0% | 71.0% |
| 3f8tA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 41.0 | 3.47e-01 | 90.9% | 48.8% |
| 5zx8A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.59 | 44.0 | 2.83e-01 | 87.9% | 16.7% |
| 4cc9A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 42.0 | 2.49e-01 | 84.8% | 21.2% |
| 1ej6A04 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 45.0 | 2.82e-01 | 100.0% | 60.9% |
| 1kbeA00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.58 | 40.0 | 3.71e-01 | 75.8% | 75.5% |
| 3omzA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 2.94e-01 | 81.8% | 84.5% |
| 3iylW04 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 40.0 | 2.58e-01 | 100.0% | 60.5% |
| 4xpmB00 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.54 | 38.0 | 3.22e-01 | 75.8% | 43.3% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 34.0 | 3.11e-01 | 87.9% | 47.1% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4976822 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.82 | 62.0 | 4.08e-01 | 84.8% | 21.6% |
| 3685207 | 2.1.1.51 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 | 0.81 | 59.0 | 3.79e-01 | 81.8% | 18.1% |
| 4929508 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 57.0 | 3.80e-01 | 84.8% | 20.8% |
| 1510479 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.77 | 58.0 | 3.80e-01 | 87.9% | 19.2% |
| 4970474 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.77 | 57.0 | 3.78e-01 | 84.8% | 20.8% |
| 3406463 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.77 | 52.0 | 4.92e-01 | 72.7% | 57.5% |
| 3415332 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.76 | 52.0 | 5.00e-01 | 75.8% | 60.0% |
| 4945128 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 58.0 | 5.80e-01 | 87.9% | 85.7% |
| 4028093 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 54.0 | 3.68e-01 | 84.8% | 21.6% |
| 3484622 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.74 | 51.0 | 3.81e-01 | 72.7% | 31.2% |
| 5020293 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.73 | 54.0 | 5.02e-01 | 87.9% | 62.2% |
| 4932429 | 375.1.1.13 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae | 0.73 | 56.0 | 4.59e-01 | 87.9% | 46.0% |
| 4930635 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.72 | 52.0 | 5.02e-01 | 84.8% | 67.5% |
| 5075189 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.72 | 53.0 | 3.29e-01 | 84.8% | 13.7% |
| 3612107 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.71 | 56.0 | 4.78e-01 | 93.9% | 61.7% |
| 4962086 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.71 | 54.0 | 5.22e-01 | 90.9% | 77.5% |
| 4941648 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.70 | 52.0 | 3.24e-01 | 84.8% | 13.8% |
| 3255203 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 51.0 | 4.90e-01 | 84.8% | 72.5% |
| 3666644 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.69 | 48.0 | 4.81e-01 | 75.8% | 77.1% |
| 3936595 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 47.0 | 3.98e-01 | 75.8% | 40.0% |
| 3359789 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.68 | 52.0 | 4.05e-01 | 93.9% | 65.9% |
| 3171207 | 3016.1.1.7 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Cys_Met_Meta_PP | 0.67 | 52.0 | 3.35e-01 | 93.9% | 82.6% |
| 4952442 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 49.0 | 4.41e-01 | 81.8% | 60.0% |
| 1650067 | 375.1.1.60 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR | 0.67 | 49.0 | 4.98e-01 | 84.8% | 93.5% |
| 4964214 | 375.8.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B | 0.67 | 51.0 | 4.43e-01 | 87.9% | 58.2% |
| 3621229 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.66 | 47.0 | 3.70e-01 | 78.8% | 35.7% |
| 3262367 | 2.1.1.103 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PHA02142 | 0.66 | 48.0 | 3.20e-01 | 81.8% | 23.3% |
| 3421203 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.65 | 45.0 | 3.75e-01 | 72.7% | 43.3% |
| 3639147 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.65 | 51.0 | 2.92e-01 | 87.9% | 20.0% |
| 4202634 | 375.1.1.11 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27 | 0.65 | 47.0 | 4.05e-01 | 84.8% | 50.0% |
| 3742502 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.65 | 48.0 | 3.77e-01 | 93.9% | 38.9% |
| 3391202 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 47.0 | 3.84e-01 | 81.8% | 48.6% |
| 4982959 | 3922.1.1.357 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Auto_anti-p27 | 0.63 | 48.0 | 3.64e-01 | 97.0% | 32.0% |
| 4454089 | 2487.1.1.3 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C | 0.62 | 51.0 | 3.31e-01 | 97.0% | 21.8% |
| 2800346 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 47.0 | 4.51e-01 | 93.9% | 95.3% |
| 5050250 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 46.0 | 4.61e-01 | 87.9% | 82.9% |
| 3514931 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 47.0 | 4.54e-01 | 90.9% | 77.5% |
| 3707626 | 375.1.1.30 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 | 0.61 | 43.0 | 3.62e-01 | 84.8% | 45.7% |
| 1162279 | 2003.1.5.91 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Reovirus_L2_MT2 | 0.61 | 44.0 | 2.76e-01 | 87.9% | 75.3% |
| 5026901 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 43.0 | 3.83e-01 | 87.9% | 56.7% |
| 3259235 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 40.0 | 4.00e-01 | 81.8% | 90.0% |
| 3556873 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.58 | 41.0 | 3.20e-01 | 75.8% | 31.2% |
| 3374952 | 375.4.1.5 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C | 0.57 | 41.0 | 3.29e-01 | 87.9% | 35.3% |
| 3179779 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.55 | 40.0 | 3.04e-01 | 72.7% | 26.7% |
| 4028249 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.54 | 38.0 | 3.41e-01 | 72.7% | 44.4% |
| 5076006 | 109.4.1.195 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_11 | 0.50 | 36.0 | 2.25e-01 | 87.9% | 10.9% |