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MK249872.1__AZU97934.1__X__00061

Bact-Vir

MK249872.1__AZU97934.1__X__00061

Identity

Accession:
MK249872 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_LP.1

TaxID: 2500150

Cluster

View cluster (247 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-118
PDB
Domain cluster: rep: NC_041949.1__YP_009603211.1__FDH66_gp75__00023__D24-141
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ltoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 50.0 5.14e-01 100.0% 77.1%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 46.0 4.75e-01 100.0% 71.7%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 45.0 4.85e-01 100.0% 81.1%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.64 53.0 5.66e-01 99.1% 100.0%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 35.0 3.83e-01 78.6% 66.3%
1qz8A01 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.61 42.0 4.40e-01 100.0% 76.2%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 28.0 3.44e-01 97.3% 74.3%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 35.0 3.82e-01 100.0% 80.5%
6wl5A01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.53 38.0 3.46e-01 74.1% 100.0%
1vw4102 3.90.280.10 Alpha Beta › Alpha-Beta Complex › Phosphatidylethanolamine-binding Protein › PEBP-like 0.52 40.0 3.28e-01 83.0% 53.3%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.51 45.0 4.04e-01 100.0% 79.0%
2kcuA00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.51 38.0 3.39e-01 80.4% 90.4%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4169622 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.71 47.0 3.73e-01 100.0% 34.1%
5082946 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 52.0 5.88e-01 83.0% 100.0%
3532116 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.70 46.0 3.73e-01 100.0% 34.9%
1147338 1.1.5.5 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pico_P2A 0.67 45.0 4.16e-01 100.0% 54.2%
4879695 1.1.13.29 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_gp28 0.66 56.0 5.26e-01 100.0% 75.0%
4032900 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 55.0 5.64e-01 100.0% 96.2%
4957568 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 44.0 5.02e-01 93.8% 96.5%
5068310 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.61 32.0 3.78e-01 77.7% 71.2%
3328224 4.1.1.336 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7699 0.60 36.0 3.46e-01 100.0% 50.8%
3340540 1.1.17.19 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Nal1_C 0.59 47.0 3.58e-01 100.0% 34.9%
5072399 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.59 32.0 3.46e-01 78.6% 61.7%
5040160 305.1.1.2 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.58 32.0 3.41e-01 79.5% 59.0%
3943689 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 46.0 4.67e-01 86.6% 87.3%
5013200 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.56 49.0 4.59e-01 100.0% 77.1%
3453256 1.1.5.68 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Nal1_C 0.54 46.0 3.47e-01 94.6% 77.6%
3597372 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.54 48.0 3.61e-01 100.0% 43.2%
4950626 11.1.1.1403 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 0.53 39.0 3.48e-01 83.9% 53.8%
4018849 11.1.1.122 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.53 33.0 3.33e-01 85.7% 60.0%
3597959 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 41.0 3.36e-01 85.7% 72.6%
3269940 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.52 42.0 3.14e-01 100.0% 34.6%
3704634 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 44.0 3.42e-01 100.0% 40.8%
3398447 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.51 43.0 3.28e-01 100.0% 36.8%
4157825 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.51 46.0 4.39e-01 100.0% 93.1%
3992144 708.1.2.5 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Mss4 0.50 41.0 4.17e-01 100.0% 89.9%
3843527 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.50 44.0 3.56e-01 99.1% 84.4%