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MK257744.1__AZU97757.1__PGDDIFCJ_00128__00127

Bact-Vir

MK257744.1__AZU97757.1__PGDDIFCJ_00128__00127

Identity

Accession:
MK257744 ↗
Kingdom:
phage

Quality

73.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thermus_phage_YS40_Isch

TaxID: 2494333

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-71
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.77 69.0 6.47e-01 100.0% 84.7%
1k8kF00 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.76 63.0 4.52e-01 90.0% 50.3%
4n1kD00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.73 58.0 4.98e-01 86.7% 79.8%
2ouwB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.62 46.0 3.54e-01 83.3% 35.3%
2jx4A01 6.10.140.460 Special › Helix non-globular › Helix Hairpins › 0.55 37.0 3.99e-01 73.3% 87.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3735913 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.79 73.0 4.50e-01 100.0% 19.7%
3666875 1025.1.1.4 ↗ alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain › DUF641 0.70 55.0 5.10e-01 86.7% 66.7%
4962497 5073.1.3.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Potassium-transporting ATPase subunit KdpB transmembrane domain 0.65 56.0 3.82e-01 100.0% 58.7%
4012148 604.13.1.0 ↗ alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like 0.56 43.0 3.65e-01 90.0% 48.7%