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MK279853.1__AZS07931.1__PBI_GRAY_78__00078

Bact-Vir

MK279853.1__AZS07931.1__PBI_GRAY_78__00078

Identity

Accession:
MK279853 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-83
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.78 56.0 5.71e-01 76.3% 77.3%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 5.18e-01 89.5% 94.7%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.80e-01 73.7% 91.8%
1e29A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.66 57.0 4.80e-01 100.0% 94.8%
1jhfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 5.75e-01 100.0% 100.0%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 47.0 5.13e-01 76.3% 98.4%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 5.56e-01 90.8% 100.0%
1wgxA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 43.0 4.39e-01 93.4% 76.7%
3x1oA00 1.20.120.1790 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 53.0 4.28e-01 97.4% 96.0%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.38e-01 97.4% 73.5%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.58 49.0 4.04e-01 94.7% 93.7%
1h72C02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.56 37.0 3.07e-01 73.7% 37.0%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.42e-01 96.1% 81.4%
4d7kA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 4.35e-01 96.1% 75.0%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 38.0 3.88e-01 72.4% 100.0%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.55 31.0 3.78e-01 86.8% 89.4%
1u2wD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.87e-01 93.4% 66.0%
1fp2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 4.26e-01 96.1% 80.2%
2pg0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 37.0 3.05e-01 73.7% 52.3%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.53 32.0 3.47e-01 84.2% 71.9%
4s2rQ03 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.53 43.0 2.96e-01 93.4% 83.5%
5mmjb01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 39.0 3.26e-01 80.3% 85.1%
2jbrA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 41.0 3.65e-01 89.5% 68.9%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 39.0 4.28e-01 82.9% 100.0%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.51 35.0 3.56e-01 72.4% 72.4%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.50 39.0 3.88e-01 86.8% 92.4%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.50 37.0 2.91e-01 80.3% 63.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3543711 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.81 59.0 5.72e-01 76.3% 68.2%
3567088 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 56.0 5.67e-01 75.0% 76.0%
4340348 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 56.0 4.48e-01 75.0% 52.1%
3518933 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.77 53.0 5.66e-01 71.1% 98.5%
4941846 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.76 51.0 5.17e-01 73.7% 70.7%
3702325 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 49.0 5.67e-01 90.8% 100.0%
4218571 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 48.0 5.36e-01 73.7% 98.2%
3436562 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 49.0 4.98e-01 73.7% 90.7%
5052425 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 5.20e-01 84.2% 93.3%
3737537 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.69 49.0 5.20e-01 75.0% 93.8%
3896790 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 47.0 4.74e-01 75.0% 72.0%
3234731 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.68 52.0 5.62e-01 88.2% 95.4%
3978934 101.1.2.826 alpha arrays › HTH › HTH › winged helix domain › KfrA_N 0.68 44.0 5.01e-01 73.7% 100.0%
4612394 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.68 46.0 4.39e-01 98.7% 59.6%
3621329 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.67 48.0 4.49e-01 75.0% 83.2%
3922168 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.67 55.0 5.69e-01 86.8% 94.3%
3363636 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.67 47.0 4.58e-01 90.8% 67.1%
3797632 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 52.0 5.60e-01 89.5% 96.9%
5048461 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 47.0 4.63e-01 76.3% 94.1%
4977185 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 4.15e-01 93.4% 43.3%
3662905 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.65 45.0 4.97e-01 90.8% 100.0%
4559316 101.1.2.352 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.65 53.0 5.49e-01 89.5% 94.3%
5040366 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 48.0 5.29e-01 97.4% 100.0%
4962267 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.65 43.0 4.15e-01 97.4% 57.8%
4506467 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.65 45.0 4.52e-01 75.0% 72.0%
3963405 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 43.0 4.83e-01 98.7% 94.5%
3610704 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.65 53.0 5.19e-01 90.8% 97.6%
3965373 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.65 51.0 5.35e-01 98.7% 92.9%
4000709 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.65 51.0 5.29e-01 82.9% 100.0%
3509156 101.1.2.352 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.63 45.0 4.70e-01 75.0% 100.0%
3330762 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.63 46.0 4.08e-01 100.0% 52.2%
3552825 101.1.1.83 alpha arrays › HTH › HTH › Three-helical HTH › ROQ_II 0.63 43.0 4.66e-01 93.4% 90.0%
4168631 101.1.6.20 alpha arrays › HTH › HTH › TrpR › PF28388 0.63 40.0 4.71e-01 75.0% 98.0%
3936163 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.63 49.0 5.31e-01 93.4% 98.5%
1414926 101.1.2.224 alpha arrays › HTH › HTH › winged helix domain › DUF6945 0.62 53.0 4.71e-01 97.4% 80.9%
3269341 101.1.10.22 alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.62 44.0 4.22e-01 100.0% 64.4%
3947132 101.1.1.109 alpha arrays › HTH › HTH › Three-helical HTH › DUF2543 0.62 48.0 4.90e-01 100.0% 88.0%
5000182 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.61 47.0 4.26e-01 100.0% 61.0%
3928101 108.1.1.30 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 0.61 52.0 4.10e-01 96.1% 90.3%
3608869 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 54.0 4.91e-01 97.4% 93.0%
4239540 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.26e-01 97.4% 60.9%
3653854 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 44.0 4.44e-01 80.3% 89.3%
3702909 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.59 48.0 3.54e-01 92.1% 56.8%
3514901 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.58 50.0 5.12e-01 97.4% 96.0%
4021213 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 44.0 4.73e-01 88.2% 96.9%
3924318 6166.1.1.0 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 0.57 47.0 3.58e-01 94.7% 63.1%
3915446 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.56 45.0 3.50e-01 93.4% 83.6%
3299249 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.56 45.0 3.43e-01 93.4% 62.4%
3287895 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 46.0 3.00e-01 97.4% 63.1%
5031824 2004.1.1.220 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.55 47.0 2.90e-01 100.0% 14.3%
4032989 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.54 40.0 3.35e-01 81.6% 75.7%
3668668 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.53 45.0 3.91e-01 97.4% 74.4%
4944741 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.19e-01 77.6% 57.9%
3319227 1021.1.1.2 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.53 39.0 4.03e-01 78.9% 94.3%
5064595 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.53 39.0 2.90e-01 80.3% 38.6%
3360961 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.52 45.0 3.54e-01 100.0% 55.4%
3362479 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.52 42.0 3.35e-01 93.4% 83.5%
D2 medium residues 84-137
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4is7A02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.72 48.0 4.33e-01 98.1% 51.4%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 41.0 2.79e-01 90.7% 18.6%
4h0pB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 51.0 3.30e-01 98.1% 41.6%
2f9wA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 48.0 3.76e-01 98.1% 52.5%
7vzrc01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.56 41.0 3.27e-01 81.5% 41.2%
7ce1A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 37.0 3.82e-01 94.4% 75.0%
2o90A00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.54 40.0 3.19e-01 79.6% 74.8%
2vsoF01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 44.0 2.94e-01 98.1% 30.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2526237 2003.1.6.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.64 46.0 3.12e-01 81.5% 45.1%
3703167 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 50.0 3.32e-01 87.0% 23.7%
3931037 1008.1.1.0 alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.62 48.0 4.05e-01 100.0% 51.8%
3317655 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.61 45.0 4.67e-01 81.5% 100.0%
3190774 316.1.1.25 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 0.56 47.0 3.17e-01 94.4% 39.1%
4619943 376.1.3.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › STL11_N 0.56 42.0 3.14e-01 81.5% 81.5%
3407500 2006.1.4.10 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.56 41.0 3.04e-01 79.6% 73.3%
11233 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.56 48.0 3.63e-01 98.1% 46.3%
4929500 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 38.0 3.70e-01 72.2% 68.3%
5050773 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 47.0 3.44e-01 98.1% 74.2%
4974021 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.54 47.0 3.31e-01 100.0% 79.4%
3394135 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.53 45.0 3.80e-01 94.4% 66.7%