Back to structures

MK279899.1__AZS11725.1__PBI_MAJA_27__00027

Bact-Vir

MK279899.1__AZS11725.1__PBI_MAJA_27__00027

Identity

Accession:
MK279899 ↗
Kingdom:
phage

Quality

82.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-132
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3emlA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.71 54.0 3.85e-01 82.1% 66.0%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 44.0 4.26e-01 72.6% 75.5%
4xvxA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 45.0 3.94e-01 77.9% 51.7%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 46.0 4.47e-01 78.9% 91.3%
5ux2B01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 46.0 3.56e-01 81.1% 87.4%
6tqpA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.60 43.0 3.82e-01 78.9% 51.5%
7b00A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.60 45.0 2.94e-01 80.0% 70.4%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 50.0 4.31e-01 94.7% 94.8%
4dkcB00 1.20.1250.80 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 0.58 42.0 3.56e-01 83.2% 44.4%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 40.0 3.78e-01 72.6% 69.2%
1fx8A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.57 46.0 3.47e-01 90.5% 90.2%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.56 33.0 3.33e-01 87.4% 56.8%
5u9nB00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 39.0 3.68e-01 81.1% 58.3%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.56 45.0 3.96e-01 87.4% 64.7%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.53 41.0 3.90e-01 83.2% 71.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3322575 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.69 51.0 3.67e-01 76.8% 64.1%
4149675 603.1.1.128 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › MSP1_C 0.69 49.0 3.32e-01 73.7% 46.4%
1943640 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.68 45.0 4.37e-01 71.6% 59.8%
3613133 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.67 47.0 4.96e-01 77.9% 82.4%
3508712 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.64 46.0 3.45e-01 76.8% 68.0%
3981661 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 44.0 4.52e-01 78.9% 80.0%
3525009 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.58 42.0 2.71e-01 75.8% 73.0%
3709427 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 49.0 3.83e-01 97.9% 67.1%
2439622 109.4.1.1287 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_8, TPR_16 0.57 49.0 2.85e-01 94.7% 23.8%
3282593 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.56 43.0 3.28e-01 84.2% 75.8%
4953696 3843.1.1.37 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF2109 0.51 36.0 3.85e-01 82.1% 88.7%
D2 medium residues 204-323
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.68 37.0 4.15e-01 75.0% 67.0%
4flbA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 46.0 4.53e-01 90.0% 64.9%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.65 42.0 4.54e-01 70.0% 78.0%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.63 42.0 4.74e-01 80.8% 90.9%
5z62E00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.62 44.0 4.57e-01 97.5% 78.9%
1j8yF01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.62 32.0 3.78e-01 71.7% 69.8%
2fulB00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 44.0 4.03e-01 93.3% 56.6%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.60 45.0 4.66e-01 78.3% 89.0%
1n00A01 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.59 37.0 4.33e-01 70.0% 90.5%
1bc0A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.59 40.0 4.55e-01 88.3% 95.3%
1ldjA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.58 48.0 4.74e-01 89.2% 84.8%
2np5D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 43.0 3.94e-01 79.2% 77.2%
3rk6A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 48.0 4.04e-01 95.0% 76.0%
4he8D00 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.56 33.0 3.04e-01 75.8% 43.1%
1mijA00 1.10.10.500 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeo-prospero domain 0.56 40.0 3.89e-01 75.0% 90.6%
1epuA03 1.25.40.60 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 38.0 3.80e-01 93.3% 66.9%
3ucaA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 49.0 3.78e-01 100.0% 77.4%
1vdyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 46.0 4.42e-01 91.7% 93.6%
3ihvA03 1.25.40.900 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 41.0 3.91e-01 94.2% 69.1%
4xaxB02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.54 40.0 4.33e-01 97.5% 96.0%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.53 28.0 3.03e-01 82.5% 57.8%
1z21A00 1.10.10.1000 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain 0.53 39.0 4.29e-01 88.3% 97.9%
3cjdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 40.0 3.54e-01 83.3% 81.3%
3gziA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 38.0 3.24e-01 78.3% 54.2%
3feyA02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 43.0 3.79e-01 95.0% 71.9%
5ctrA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 44.0 3.35e-01 95.8% 56.4%
4wk5A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.50 43.0 3.42e-01 95.0% 99.2%
1vctA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.50 36.0 3.80e-01 75.0% 88.1%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590458 3352.1.1.8 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PTPS_related 0.64 58.0 4.00e-01 100.0% 60.7%
3971032 1051.1.1.1 alpha superhelices › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › HOASN 0.61 41.0 4.67e-01 84.2% 92.2%
3266269 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.60 50.0 4.25e-01 92.5% 79.5%
3345552 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 44.0 3.90e-01 97.5% 52.6%
4373354 604.39.1.12 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › VTT_dom 0.58 43.0 3.69e-01 79.2% 77.8%
3824766 109.4.1.1261 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.57 48.0 3.48e-01 89.2% 38.7%
4970553 3542.1.1.1 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin 0.57 49.0 3.81e-01 96.7% 80.0%
4261355 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.56 38.0 3.62e-01 92.5% 58.6%
3880679 109.4.1.532 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4704 0.56 44.0 4.30e-01 96.7% 77.0%
3832617 109.4.1.843 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3_ARM 0.56 49.0 3.96e-01 100.0% 76.7%
3607692 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 47.0 3.81e-01 94.2% 50.8%
4364160 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 39.0 3.74e-01 73.3% 71.0%
3274860 109.25.1.0 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A 0.55 45.0 3.94e-01 99.2% 57.8%
3743121 109.4.1.80 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 0.54 47.0 3.96e-01 96.7% 66.3%
3756471 633.24.1.4 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › RIN1 0.53 39.0 4.05e-01 78.3% 92.2%
3197495 109.4.1.313 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N 0.52 44.0 3.44e-01 90.0% 44.0%
3695244 3615.1.1.0 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.52 37.0 3.32e-01 73.3% 91.2%
3594688 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 3.60e-01 95.0% 56.6%
3803325 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 35.0 3.66e-01 70.0% 96.4%
4011777 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.51 39.0 2.80e-01 81.7% 73.4%
3719061 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 45.0 3.50e-01 100.0% 77.9%
2060710 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.51 35.0 3.61e-01 70.0% 91.0%
4371241 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.51 29.0 3.10e-01 100.0% 61.8%
3626611 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 45.0 3.12e-01 99.2% 41.0%
D3 medium residues 324-452
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 31.0 3.33e-01 76.7% 68.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164267 3352.1.1.39 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Wzy_C 0.78 71.0 5.03e-01 96.9% 41.8%
4329718 7011.1.1.6 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C 0.77 69.0 4.86e-01 96.1% 67.9%
3989196 7011.1.1.6 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C 0.77 72.0 5.11e-01 100.0% 36.7%
3957302 7011.1.1.6 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C 0.77 71.0 5.04e-01 99.2% 36.2%
4988211 7011.1.1.0 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain 0.77 66.0 5.08e-01 99.2% 42.5%
3946506 7011.1.1.6 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C 0.76 70.0 4.91e-01 99.2% 33.7%
3587904 7011.1.1.0 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain 0.75 66.0 4.64e-01 99.2% 31.9%
3974227 7011.1.1.6 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C 0.74 68.0 5.02e-01 100.0% 40.9%
4135738 7011.1.1.6 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C 0.72 65.0 4.53e-01 97.7% 46.3%
3987661 7011.1.1.6 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C 0.71 64.0 4.89e-01 100.0% 46.0%
4301705 7011.1.1.6 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C 0.70 63.0 4.27e-01 99.2% 27.9%
3972810 7011.1.1.6 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C 0.68 62.0 4.27e-01 100.0% 31.3%
4524855 7011.1.1.6 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › Wzy_C 0.67 60.0 4.28e-01 99.2% 32.4%
4952974 7011.1.1.5 alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain › O_anti_polymase 0.63 55.0 4.27e-01 97.7% 45.2%