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MK279900.1__AZS11760.1__PBI_NINA_6__00006
Bact-VirMK279900.1__AZS11760.1__PBI_NINA_6__00006
Identity
- Accession:
- MK279900 ↗
- Kingdom:
- phage
Quality
53.0
mean pLDDT
Taxonomy
TaxID: 2499026
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-169
Domain cluster:
rep: KR053196.1__AKJ72169.1__TPA4_4__00004__D2-213
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25310.2 best | VG15 | 79.6 | 5.60e-22 | 96.4% | 80.2% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jvmB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 25.0 | 3.17e-01 | 84.9% | 72.0% |
| 3tbiB02 | 6.10.140.1670 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 27.0 | 3.38e-01 | 78.3% | 81.0% |
| 3snhA02 | 1.20.120.1240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Dynamin, middle domain | 0.52 | 42.0 | 3.84e-01 | 84.3% | 66.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3946757 | 601.19.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F | 0.77 | 61.0 | 5.51e-01 | 83.7% | 83.6% |
| 4964372 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.62 | 56.0 | 4.73e-01 | 100.0% | 93.9% |
| 3337878 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.59 | 39.0 | 4.61e-01 | 81.3% | 95.7% |
| 3854050 | 604.12.1.43 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Tim17 | 0.56 | 36.0 | 3.96e-01 | 77.7% | 78.5% |
| 4318044 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.54 | 26.0 | 3.45e-01 | 80.7% | 84.4% |
| 3637135 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.53 | 33.0 | 3.72e-01 | 78.9% | 82.5% |
D2
high
residues 186-310
D3
medium
residues 386-443
D4
medium
residues 444-518