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MK279909.1__AZS12640.1__SEA_DRLUPO_104__00104

Bact-Vir

MK279909.1__AZS12640.1__SEA_DRLUPO_104__00104

Identity

Accession:
MK279909 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Barnyardvirus› Mycobacterium_phage_DrLupo

TaxID: 2499037

Cluster

View cluster (40 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-70
PDB
Domain cluster: rep: OR613480.1__WNT45448.1__SEA_ARGAN_64__00064__D11-81
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.67 45.0 3.67e-01 70.9% 40.4%
6p8uA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.64 44.0 3.26e-01 72.7% 75.7%
3h1tA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.63 48.0 3.66e-01 83.6% 91.2%
1cw1A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.63 46.0 2.77e-01 80.0% 22.2%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 49.0 4.55e-01 90.9% 89.5%
2czrA01 3.40.1350.70 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain 0.63 48.0 3.99e-01 87.3% 85.8%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 50.0 3.59e-01 89.1% 86.7%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.63 48.0 4.05e-01 87.3% 84.3%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 41.0 4.01e-01 70.9% 62.3%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 41.0 4.49e-01 70.9% 86.7%
1px5A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.61 42.0 3.29e-01 76.4% 68.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.18e-01 83.6% 93.3%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 44.0 3.41e-01 81.8% 68.1%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 4.38e-01 72.7% 88.9%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 3.77e-01 83.6% 86.5%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 42.0 2.68e-01 78.2% 64.9%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.58 48.0 4.12e-01 98.2% 71.9%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.57 46.0 4.68e-01 100.0% 96.4%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 43.0 2.70e-01 83.6% 23.7%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 2.91e-01 78.2% 40.3%
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.56 44.0 3.67e-01 89.1% 48.0%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 3.70e-01 72.7% 73.8%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 39.0 3.17e-01 76.4% 42.3%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 38.0 3.71e-01 72.7% 71.9%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 41.0 2.50e-01 85.5% 21.8%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.49e-01 90.9% 97.5%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 33.0 3.64e-01 72.7% 79.5%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 39.0 3.07e-01 81.8% 95.1%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.54 42.0 2.73e-01 90.9% 36.5%
4jp0A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 40.0 3.15e-01 89.1% 86.6%
2lfiA00 2.60.40.4300 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.06e-01 80.0% 77.0%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 37.0 2.89e-01 81.8% 32.3%
5yy8A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.52 44.0 2.88e-01 100.0% 94.5%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 41.0 3.72e-01 92.7% 97.5%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 40.0 3.55e-01 89.1% 94.0%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 40.0 2.61e-01 90.9% 33.9%
3d89A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 34.0 2.73e-01 72.7% 37.5%
3qwuA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.92e-01 80.0% 95.7%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 37.0 2.88e-01 89.1% 97.5%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4440689 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 43.0 4.11e-01 72.7% 75.4%
4660203 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.62 43.0 3.39e-01 74.5% 38.4%
5038175 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.62 50.0 4.51e-01 92.7% 86.3%
4647064 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.62 41.0 4.09e-01 70.9% 71.7%
4082864 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 45.0 3.76e-01 81.8% 97.1%
3167073 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 48.0 3.52e-01 89.1% 91.3%
3285546 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 41.0 3.37e-01 70.9% 92.7%
3483955 386.1.1.6 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.57 38.0 3.41e-01 70.9% 55.3%
5068097 2484.1.1.71 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RACo_C_ter 0.57 39.0 2.37e-01 72.7% 38.1%
3260335 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.56 44.0 2.72e-01 89.1% 21.9%
3650660 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 39.0 3.07e-01 76.4% 50.0%
3928962 4161.1.1.2 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC_N 0.55 43.0 3.25e-01 89.1% 65.3%
4957888 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.55 42.0 4.16e-01 83.6% 95.0%
4948719 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.54 38.0 3.18e-01 94.5% 42.0%
3617714 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 37.0 3.45e-01 76.4% 68.0%
4002261 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 42.0 2.45e-01 90.9% 41.5%
4098275 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 42.0 3.79e-01 92.7% 96.2%
3838921 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.52 41.0 3.73e-01 90.9% 95.0%
4599942 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.52 42.0 3.77e-01 92.7% 96.2%
4036399 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 41.0 3.63e-01 90.9% 96.5%
1171970 4294.1.1.10 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske_4 0.52 34.0 3.44e-01 70.9% 96.6%
3593008 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 42.0 2.63e-01 96.4% 94.0%
4085280 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.51 42.0 3.81e-01 94.5% 95.0%
4456820 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.51 43.0 3.84e-01 96.4% 95.0%
3935356 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.51 37.0 2.94e-01 78.2% 52.5%
3482645 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.51 32.0 3.71e-01 72.7% 100.0%
4088180 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.51 42.0 3.67e-01 92.7% 96.5%
3819668 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.51 34.0 3.71e-01 78.2% 86.4%
4383296 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.51 42.0 3.76e-01 94.5% 96.2%
4655257 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.51 42.0 3.81e-01 96.4% 93.8%
3889228 386.1.1.66 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Spt46 0.50 42.0 3.77e-01 94.5% 79.5%
4160858 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.50 41.0 3.15e-01 100.0% 89.3%
4242523 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.50 42.0 3.77e-01 96.4% 96.2%
3919221 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.50 40.0 3.63e-01 89.1% 80.0%