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MK284526.1__AZU99723.1__DK1_000019__00019

Bact-Vir

MK284526.1__AZU99723.1__DK1_000019__00019

Identity

Accession:
MK284526 ↗
Kingdom:
phage

Quality

79.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salasmaviridae› Hemphillvirus› Bacillus_phage_DK1

TaxID: 2500808

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-79
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05435.17 best Phi-29_GP3 44.4 2.20e-11 100.0% 22.2%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ex3B01 6.10.250.960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.76 64.0 6.11e-01 93.8% 84.2%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.75 66.0 6.04e-01 100.0% 81.0%
3l8kA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 48.0 3.23e-01 82.8% 21.2%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.68 50.0 3.44e-01 78.1% 93.3%
4mndA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.67 45.0 3.26e-01 70.3% 26.2%
4lqqB00 1.20.140.30 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator 0.67 58.0 4.52e-01 100.0% 52.1%
4o6mA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.66 57.0 4.13e-01 100.0% 44.1%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.66 44.0 3.85e-01 70.3% 71.0%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.65 54.0 5.41e-01 98.4% 97.0%
2vk9A04 1.10.274.80 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.63 48.0 4.09e-01 81.2% 94.2%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.63 45.0 3.91e-01 90.6% 51.1%
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 43.0 3.64e-01 71.9% 48.1%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 33.0 3.84e-01 81.2% 70.8%
2f4iA01 1.10.10.1260 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Envelope glycoprotein gp160, DUF2291, helical domain 0.61 36.0 3.72e-01 93.8% 59.0%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.60 54.0 5.19e-01 100.0% 88.9%
2aqwA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 50.0 3.26e-01 98.4% 29.6%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 42.0 3.77e-01 79.7% 54.4%
3a7mA01 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.58 52.0 4.36e-01 100.0% 69.1%
3d2fA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.57 48.0 4.38e-01 95.3% 70.2%
1yi8B01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.57 43.0 2.94e-01 81.2% 55.6%
2fzlA02 6.10.140.1180 Special › Helix non-globular › Helix Hairpins › 0.56 38.0 3.90e-01 70.3% 96.8%
1aogB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 40.0 2.76e-01 82.8% 22.6%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 45.0 4.60e-01 100.0% 98.4%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 32.0 3.19e-01 87.5% 58.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4977511 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.81 70.0 5.69e-01 93.8% 76.5%
4940866 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.77 53.0 3.85e-01 71.9% 68.2%
5044635 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.76 52.0 3.77e-01 71.9% 67.4%
3222543 3652.1.1.0 ↗ alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 0.74 59.0 6.12e-01 89.1% 100.0%
4027507 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.71 63.0 5.13e-01 100.0% 70.0%
4995680 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.70 41.0 4.26e-01 81.2% 63.3%
3510564 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.70 61.0 5.25e-01 100.0% 66.0%
4959254 4953.1.1.41 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › DUF6789 0.69 55.0 4.23e-01 89.1% 93.3%
4940618 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.67 51.0 4.66e-01 85.9% 63.7%
4962879 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.67 52.0 3.79e-01 82.8% 57.7%
3488174 610.2.1.1 ↗ alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical 0.66 46.0 3.94e-01 73.4% 73.3%
3503238 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.66 56.0 4.24e-01 100.0% 58.2%
3584802 193.1.1.43 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CAMSAP_CH, CH_CAMSAP2_N 0.62 51.0 3.39e-01 98.4% 24.3%
3651135 3788.1.1.20 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VIN3_C 0.62 53.0 5.05e-01 98.4% 84.0%
4273233 298.4.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.61 50.0 3.82e-01 89.1% 87.6%
4946450 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.61 50.0 4.41e-01 85.9% 62.5%
4945073 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.61 50.0 4.37e-01 85.9% 61.1%
4004467 3457.1.1.1 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.60 53.0 4.03e-01 100.0% 51.6%
4989791 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.59 51.0 3.32e-01 100.0% 30.5%
3937960 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.59 47.0 4.30e-01 85.9% 97.6%
4963078 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.57 52.0 4.51e-01 98.4% 85.3%
3388844 3755.3.1.427 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ACP53EA 0.55 36.0 3.19e-01 87.5% 44.2%
4935145 4953.1.1.2 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C 0.53 42.0 4.04e-01 93.8% 78.7%
3686953 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.52 40.0 3.87e-01 90.6% 74.3%