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MK290737.1__AZV02047.1__Arno162_7__00007

Bact-Vir

MK290737.1__AZV02047.1__Arno162_7__00007

Identity

Accession:
MK290737 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Arnovirus› Pectobacterium_phage_Arno162

TaxID: 2500577

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-84
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10902.14 best WYL_2 30.6 4.30e-07 81.0% 81.1%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 5.37e-01 88.1% 79.2%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 38.0 4.27e-01 86.9% 77.8%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.62 42.0 3.24e-01 83.3% 30.2%
3pfeA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.61 42.0 2.89e-01 70.2% 91.3%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 32.0 3.78e-01 78.6% 73.7%
3iwcB00 3.30.360.110 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase domain 0.59 29.0 3.42e-01 100.0% 65.6%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 41.0 4.19e-01 79.8% 74.1%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 36.0 4.16e-01 70.2% 91.7%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 35.0 3.03e-01 72.6% 39.1%
2r78C00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 38.0 3.41e-01 78.6% 50.0%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 32.0 3.02e-01 73.8% 45.0%
2q5wD00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.55 33.0 3.40e-01 100.0% 62.3%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 38.0 3.40e-01 78.6% 50.0%
6nhiA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 33.0 3.36e-01 89.3% 59.5%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 35.0 3.71e-01 71.4% 72.4%
4hh2C04 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 36.0 3.24e-01 78.6% 48.7%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 38.0 3.32e-01 84.5% 47.7%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 33.0 3.21e-01 89.3% 52.0%
1pnjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 36.0 3.63e-01 71.4% 81.4%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 34.0 3.60e-01 71.4% 74.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.81e-01 92.9% 81.5%
3licA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 30.0 3.03e-01 79.8% 56.3%
2hxsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 2.97e-01 78.6% 82.0%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.50 35.0 3.75e-01 72.6% 95.6%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 60.0 6.13e-01 94.0% 85.0%
3524130 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.61 42.0 3.88e-01 86.9% 54.5%
3423334 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.60 43.0 3.81e-01 100.0% 49.2%
3404158 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.60 40.0 3.68e-01 77.4% 50.4%
3181191 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.43e-01 91.7% 67.0%
3476511 4357.1.1.4 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_3 0.59 35.0 3.89e-01 86.9% 77.8%
3272897 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.58 47.0 3.55e-01 89.3% 75.6%
3971184 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.58 41.0 3.43e-01 78.6% 44.3%
4999616 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 40.0 2.60e-01 86.9% 15.4%
3599565 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 42.0 4.33e-01 81.0% 98.8%
5044925 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 37.0 3.55e-01 78.6% 60.0%
4142766 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.53 35.0 3.07e-01 86.9% 44.6%
3854230 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.53 46.0 3.12e-01 100.0% 59.1%
4120485 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.52 45.0 2.96e-01 97.6% 63.8%
3221547 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 36.0 3.69e-01 72.6% 75.0%
4945191 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 3.33e-01 78.6% 52.0%
3271628 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.51 35.0 3.17e-01 73.8% 51.3%
4235293 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 38.0 3.50e-01 83.3% 82.6%
D2 medium residues 85-136
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o8bB03 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.55 37.0 2.63e-01 71.2% 80.9%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.55 40.0 3.08e-01 86.5% 95.2%
5lqdD01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 39.0 2.71e-01 92.3% 96.7%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.50 37.0 3.37e-01 76.9% 57.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994433 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 3.31e-01 76.9% 93.3%
3267836 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.54 37.0 3.34e-01 73.1% 80.0%
3964480 101.1.2.179 ↗ alpha arrays › HTH › HTH › winged helix domain › ROXA-like_wH 0.51 41.0 3.52e-01 100.0% 88.9%