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MK290738.1__AZV02286.1__Arno18_100__00100

Bact-Vir

MK290738.1__AZV02286.1__Arno18_100__00100

Identity

Accession:
MK290738 ↗
Kingdom:
phage

Quality

58.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Arnovirus› Pectobacterium_phage_Arno18

TaxID: 2500578

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-53
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 52.0 4.60e-01 95.6% 100.0%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.61 50.0 2.83e-01 100.0% 7.2%
1s4dE02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.60 46.0 3.37e-01 88.9% 51.8%
4rlqA01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 48.0 3.13e-01 100.0% 79.7%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.62e-01 93.3% 48.7%
2hdlA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 40.0 3.39e-01 75.6% 44.2%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 41.0 3.32e-01 80.0% 57.1%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 39.0 2.92e-01 77.8% 28.7%
3hrzB01 2.20.130.20 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › 0.55 37.0 3.28e-01 77.8% 40.8%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.55 41.0 3.32e-01 93.3% 66.1%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 39.0 2.84e-01 82.2% 24.5%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.53 39.0 2.30e-01 84.4% 38.3%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 2.89e-01 73.3% 71.7%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.52 37.0 2.23e-01 91.1% 12.4%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 40.0 2.90e-01 97.8% 67.3%
4b96A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.51 38.0 2.85e-01 93.3% 50.3%
5mj3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.43e-01 95.6% 85.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4958102 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.68 48.0 4.26e-01 77.8% 52.3%
4054258 2484.1.1.47 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.66 46.0 3.22e-01 77.8% 23.6%
3626589 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.65 46.0 3.16e-01 82.2% 20.0%
3785655 109.26.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains 0.63 51.0 3.58e-01 100.0% 28.0%
5077402 2007.15.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase 0.63 51.0 3.45e-01 100.0% 23.2%
3587058 605.1.1.10 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › SPOB_a 0.61 43.0 3.68e-01 77.8% 45.0%
3692200 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.59 46.0 3.19e-01 97.8% 84.2%
3600524 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 45.0 2.61e-01 86.7% 14.8%
3553371 2004.1.1.164 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.58 46.0 3.19e-01 100.0% 52.8%
3517917 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 37.0 3.33e-01 73.3% 44.6%
3785040 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.57 40.0 2.52e-01 77.8% 12.3%
3173132 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 45.0 3.45e-01 97.8% 52.0%
5077859 2002.1.1.12 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 0.56 44.0 2.77e-01 100.0% 14.7%
4016275 109.4.1.2191 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, TPR_14, TPR_19, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C 0.56 41.0 2.32e-01 86.7% 6.2%
3487873 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 40.0 3.76e-01 84.4% 68.3%
3592793 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.53 40.0 2.67e-01 86.7% 54.8%
3252786 246.2.1.3 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos,Metallophos_C 0.53 41.0 2.54e-01 88.9% 26.8%
4876747 2486.1.1.3 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.52 38.0 2.91e-01 86.7% 59.0%
4618808 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.52 38.0 2.48e-01 86.7% 50.7%
4948253 2006.1.3.30 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Topoisom_bac 0.52 41.0 2.43e-01 100.0% 11.0%
5052232 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.51 39.0 2.44e-01 100.0% 23.2%
3216794 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 35.0 3.58e-01 75.6% 86.7%
3570332 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 38.0 3.03e-01 93.3% 77.4%
D2 high residues 454-551
PDB
Domain cluster: rep: KP202970.1__AJD82855.1__JWAP_00022__00022__D143-223
D3 medium residues 393-452
PDB
D4 medium residues 556-653
PDB
D5 medium residues 924-1034
PDB