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MK291441.1__AZV00175.1__pben1_p18__00017

Bact-Vir

MK291441.1__AZV00175.1__pben1_p18__00017

Identity

Accession:
MK291441 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Paracoccus_phage_vB_PbeS_Pben1

TaxID: 2500567

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-82
PDB
Domain cluster: rep: rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00218__D3-72
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 5.58e-01 100.0% 94.5%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 47.0 4.85e-01 98.5% 72.7%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.82e-01 98.5% 74.2%
3w20A00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.68 40.0 2.72e-01 100.0% 15.4%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 37.0 3.21e-01 97.1% 33.7%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 4.74e-01 95.6% 78.3%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.88e-01 94.1% 93.9%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 35.0 2.88e-01 100.0% 29.6%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.61 43.0 4.60e-01 95.6% 85.0%
3p42A03 3.10.560.10 Alpha Beta › Roll › Outer membrane lipoprotein wza fold like › Outer membrane lipoprotein wza domain like 0.61 37.0 3.66e-01 97.1% 56.8%
6m3aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 39.0 4.00e-01 97.1% 68.2%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.60e-01 97.1% 82.4%
2mcaA00 2.60.40.2890 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF5300 0.58 37.0 3.25e-01 98.5% 41.7%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.58 40.0 3.64e-01 73.5% 95.8%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.56 42.0 3.47e-01 100.0% 46.2%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.54 39.0 3.06e-01 77.9% 38.1%
1hezE00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 41.0 4.29e-01 98.5% 91.8%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 4.05e-01 100.0% 80.9%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.30e-01 97.1% 52.9%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.53 39.0 3.18e-01 79.4% 86.5%
2lw3A00 2.60.40.2880 Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain 0.53 33.0 3.04e-01 100.0% 46.7%
2iciA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 45.0 3.58e-01 98.5% 72.5%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 44.0 3.86e-01 98.5% 79.1%
1l0qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.61e-01 82.4% 82.2%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 44.0 3.76e-01 98.5% 70.9%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.51 39.0 3.21e-01 85.3% 57.7%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 41.0 3.59e-01 98.5% 58.4%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.50 40.0 4.10e-01 98.5% 92.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 71.0 7.25e-01 95.6% 98.5%
4632256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 70.0 6.83e-01 100.0% 97.3%
4231372 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.77 67.0 6.67e-01 95.6% 95.7%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.76 65.0 6.32e-01 95.6% 93.3%
5063433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.48e-01 98.5% 96.0%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.71 49.0 4.68e-01 98.5% 61.3%
4163851 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 46.0 4.92e-01 97.1% 80.0%
1072940 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.68 41.0 2.77e-01 100.0% 16.0%
4974211 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.66 46.0 4.84e-01 97.1% 81.7%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 48.0 4.88e-01 97.1% 80.0%
3036710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.60e-01 97.1% 76.2%
5004476 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.57e-01 97.1% 73.8%
4662294 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 43.0 4.68e-01 97.1% 85.5%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 46.0 4.64e-01 95.6% 73.9%
3959732 10.39.1.0 ↗ beta sandwiches › jelly-roll › Soluble domain of MmpS4 › Soluble domain of MmpS4 0.64 40.0 3.71e-01 100.0% 50.6%
4499953 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 42.0 4.51e-01 95.6% 78.3%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 42.0 4.22e-01 97.1% 67.1%
4961379 4176.1.1.2 ↗ a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.61 41.0 2.89e-01 100.0% 21.4%
None — 0.61 48.0 2.72e-01 89.7% 44.0%
4185009 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 43.0 4.41e-01 97.1% 78.5%
3590658 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 5.17e-01 98.5% 92.9%
4084850 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 42.0 4.34e-01 97.1% 78.5%
3993677 823.1.1.0 ↗ a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW 0.60 43.0 4.29e-01 95.6% 75.7%
5046979 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 45.0 3.90e-01 83.8% 59.1%
5045214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.25e-01 97.1% 75.7%
3566641 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 46.0 2.64e-01 89.7% 47.2%
3700673 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 49.0 3.75e-01 95.6% 47.6%
4945344 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 2.82e-01 95.6% 16.9%
4033484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.58e-01 95.6% 85.9%
3704667 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.57 42.0 2.70e-01 79.4% 31.9%
3615237 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.56 44.0 2.77e-01 100.0% 16.1%
4344448 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 45.0 3.49e-01 91.2% 53.8%
5044858 221.1.3.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain 0.55 42.0 3.65e-01 97.1% 49.6%
4182977 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.55 34.0 3.54e-01 92.6% 68.3%
3307205 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.55 44.0 3.81e-01 97.1% 91.2%
3678850 4.1.1.302 ↗ beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.54 43.0 3.40e-01 100.0% 43.0%
3724295 72.1.1.0 ↗ beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.54 38.0 3.36e-01 94.1% 51.0%
3694899 5069.1.1.71 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF3176 0.53 47.0 3.40e-01 100.0% 76.0%
3781 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.53 47.0 3.41e-01 100.0% 59.5%
3860615 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.53 46.0 4.07e-01 100.0% 70.0%
4940035 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 40.0 3.56e-01 88.2% 55.5%
4944643 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 39.0 3.36e-01 85.3% 69.2%
3621133 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 44.0 2.88e-01 95.6% 95.3%
4269668 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.51 36.0 3.90e-01 88.2% 92.7%
4956917 11.1.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.51 40.0 3.48e-01 98.5% 55.2%
4826815 10.1.1.14 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CoV_S1 0.51 45.0 3.35e-01 100.0% 56.9%