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MK291441.1__AZV00178.1__pben1_p21__00020

Bact-Vir

MK291441.1__AZV00178.1__pben1_p21__00020

Identity

Accession:
MK291441 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Paracoccus_phage_vB_PbeS_Pben1

TaxID: 2500567

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-69
PDB
Domain cluster: rep: KT724718.1__ALJ98283.1__BiPBO1_69__00069__D12-82
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rzsA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.81 63.0 6.58e-01 100.0% 90.2%
7xi5A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.80 56.0 6.28e-01 81.8% 96.1%
3bd1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 62.0 6.24e-01 100.0% 87.7%
2hinA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 60.0 6.06e-01 97.0% 86.4%
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 57.0 5.65e-01 87.9% 77.1%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 58.0 6.03e-01 100.0% 93.3%
7vjmB01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 56.0 5.73e-01 93.9% 85.9%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 57.0 5.67e-01 100.0% 82.4%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 55.0 5.58e-01 100.0% 86.4%
2ox6D00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.70 58.0 4.34e-01 90.9% 65.8%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 53.0 5.39e-01 100.0% 84.8%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 55.0 5.60e-01 100.0% 93.7%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 55.0 4.84e-01 100.0% 59.2%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 54.0 5.46e-01 100.0% 90.9%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 58.0 5.44e-01 100.0% 81.0%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 51.0 4.89e-01 95.5% 71.1%
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 57.0 5.50e-01 98.5% 87.0%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 53.0 5.34e-01 100.0% 88.1%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 53.0 5.26e-01 100.0% 84.3%
4yg1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 50.0 4.88e-01 97.0% 73.6%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 48.0 4.89e-01 77.3% 80.0%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 52.0 4.94e-01 100.0% 72.2%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 48.0 4.47e-01 100.0% 61.6%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 53.0 4.85e-01 100.0% 67.4%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 51.0 5.17e-01 93.9% 86.2%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 53.0 5.02e-01 100.0% 76.5%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 50.0 4.90e-01 100.0% 78.7%
3b7hA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 55.0 5.31e-01 100.0% 86.8%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 55.0 4.96e-01 100.0% 77.4%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 53.0 5.06e-01 100.0% 81.8%
1vpwA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 38.0 4.06e-01 77.3% 73.7%
4a1fB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 41.0 2.67e-01 83.3% 15.3%
1rp5A03 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 50.0 4.54e-01 97.0% 94.4%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 50.0 4.69e-01 100.0% 80.5%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 44.0 3.86e-01 100.0% 58.6%
4bc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 45.0 2.98e-01 100.0% 57.3%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.53 43.0 4.16e-01 92.4% 79.5%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 43.0 3.51e-01 95.5% 70.7%
2rfbA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 43.0 2.84e-01 97.0% 39.9%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.53 39.0 3.87e-01 87.9% 76.4%
3f8tA01 1.10.260.200 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.52 38.0 3.60e-01 80.3% 96.4%
1u5kA02 1.20.1440.120 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain 0.52 44.0 3.69e-01 100.0% 86.4%
1xd4A04 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.51 36.0 2.55e-01 75.8% 53.7%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 40.0 3.44e-01 90.9% 75.0%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2770 101.1.4.21 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › P22_Cro 0.81 63.0 6.58e-01 100.0% 90.2%
4008375 101.1.4.21 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › P22_Cro 0.77 61.0 6.03e-01 100.0% 80.0%
164935 101.1.4.21 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › P22_Cro 0.76 60.0 6.06e-01 97.0% 86.4%
3164312 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.74 56.0 5.34e-01 100.0% 68.8%
4004322 101.1.4.24 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › YdaS_toxin 0.74 60.0 5.82e-01 100.0% 80.0%
4933148 101.1.4.96 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › PolC_DP2_central 0.73 55.0 4.95e-01 100.0% 58.9%
2389360 101.1.4.24 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › YdaS_toxin 0.73 55.0 5.57e-01 100.0% 83.1%
3973014 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.72 57.0 5.78e-01 100.0% 87.7%
3952322 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.71 55.0 4.71e-01 90.9% 52.4%
3963744 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.71 58.0 5.49e-01 100.0% 75.0%
2389361 101.1.4.11 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Cro 0.70 47.0 4.86e-01 92.4% 74.2%
3662968 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.69 51.0 5.38e-01 78.8% 90.0%
3593198 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.69 49.0 5.49e-01 93.9% 100.0%
5011488 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.68 57.0 4.90e-01 100.0% 57.3%
4632225 101.1.4.27 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N 0.68 53.0 4.89e-01 100.0% 65.9%
3612783 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 49.0 4.20e-01 97.0% 48.2%
3278834 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.66 52.0 5.18e-01 100.0% 85.7%
5037780 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.65 57.0 5.38e-01 100.0% 87.5%
3965368 101.1.4.20 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.65 50.0 4.72e-01 97.0% 68.8%
2716468 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.65 52.0 4.74e-01 100.0% 65.6%
4008003 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.65 54.0 5.06e-01 90.9% 87.5%
5028456 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.65 48.0 4.61e-01 98.5% 67.5%
5027617 3054.1.1.0 ↗ alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.64 49.0 4.28e-01 83.3% 64.0%
4993127 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.64 55.0 5.13e-01 100.0% 80.0%
3231460 101.1.4.5 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HNF-1_N 0.63 52.0 4.53e-01 90.9% 62.0%
4114937 101.1.4.5 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HNF-1_N 0.62 49.0 4.14e-01 90.9% 50.4%
3963750 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.61 53.0 5.07e-01 100.0% 87.5%
4405465 101.1.4.5 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HNF-1_N 0.61 48.0 4.26e-01 90.9% 58.0%
4022186 101.1.4.58 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF7726 0.61 47.0 4.87e-01 83.3% 98.3%
4000036 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.53 42.0 3.39e-01 100.0% 43.0%
3651184 4957.1.1.7 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › MOM1 0.52 43.0 4.18e-01 100.0% 82.7%
4869998 829.1.1.0 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB 0.51 40.0 3.99e-01 89.4% 81.4%
4264297 101.1.2.760 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30824 0.51 41.0 3.37e-01 93.9% 91.1%