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MK291442.1__AZV00268.1__pkon1_p39__00039

Bact-Vir

MK291442.1__AZV00268.1__pkon1_p39__00039

Identity

Accession:
MK291442 ↗
Kingdom:
phage

Quality

94.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-57
PDB
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 43.0 4.58e-01 72.7% 65.3%
2ahmH02 3.30.70.3540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain 0.70 54.0 4.53e-01 83.6% 93.5%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 4.73e-01 89.1% 78.0%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.67 46.0 2.73e-01 72.7% 49.9%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 45.0 4.80e-01 89.1% 85.4%
1rvjH02 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.63 49.0 3.78e-01 90.9% 37.1%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 52.0 4.51e-01 96.4% 87.6%
2kjzA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.61 44.0 4.47e-01 100.0% 79.6%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.60 37.0 3.46e-01 89.1% 45.8%
3dorA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 51.0 4.09e-01 94.5% 89.7%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.56e-01 89.1% 84.9%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.42e-01 92.7% 70.6%
4jxuA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.60 50.0 3.75e-01 100.0% 83.1%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.59 47.0 4.04e-01 92.7% 93.8%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 38.0 3.12e-01 94.5% 34.0%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.59 40.0 2.39e-01 70.9% 42.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.61e-01 94.5% 80.6%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.55e-01 94.5% 85.7%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.21e-01 89.1% 66.7%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 45.0 4.18e-01 87.3% 72.9%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 46.0 3.43e-01 90.9% 53.8%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.09e-01 92.7% 64.0%
3ab1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 49.0 3.74e-01 96.4% 69.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 45.0 4.02e-01 87.3% 65.4%
5ygqA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 49.0 3.77e-01 96.4% 70.5%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 43.0 4.15e-01 87.3% 85.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.26e-01 87.3% 77.4%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 46.0 4.26e-01 96.4% 91.8%
3h8lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 48.0 3.23e-01 96.4% 48.3%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 45.0 4.28e-01 90.9% 86.4%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.28e-01 96.4% 55.0%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.55 47.0 4.12e-01 96.4% 69.5%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.55 44.0 3.34e-01 92.7% 59.0%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 3.76e-01 87.3% 57.0%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.81e-01 96.4% 86.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 3.96e-01 92.7% 72.7%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 42.0 3.98e-01 87.3% 77.3%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 41.0 4.06e-01 87.3% 86.7%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 40.0 2.55e-01 90.9% 51.6%
1d1lA00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.53 36.0 3.51e-01 70.9% 90.2%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.52 44.0 3.55e-01 98.2% 80.2%
1mdbA03 2.30.38.10 Mainly Beta › Roll › Luciferase; domain 3 › Luciferase; Domain 3 0.52 42.0 3.89e-01 96.4% 81.6%
2qngA01 2.60.60.30 Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains 0.52 41.0 3.09e-01 96.4% 79.4%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 42.0 3.09e-01 94.5% 62.3%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.51 41.0 3.97e-01 90.9% 85.7%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 40.0 3.72e-01 87.3% 80.0%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 43.0 4.09e-01 100.0% 85.1%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.51 36.0 2.54e-01 87.3% 20.9%
4ec7A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.51 39.0 3.27e-01 90.9% 75.0%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.93e-01 98.2% 91.8%
4guzA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.51 33.0 2.39e-01 100.0% 20.4%
1kllA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 43.0 3.36e-01 100.0% 80.5%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.50 41.0 3.03e-01 100.0% 40.7%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 43.0 3.85e-01 100.0% 77.5%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 3.78e-01 90.9% 78.9%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3699568 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.74 50.0 4.67e-01 70.9% 55.7%
3946613 2003.1.2.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.71 45.0 3.14e-01 98.2% 19.5%
3299665 244.1.1.11 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.71 41.0 2.60e-01 70.9% 11.3%
4990889 283.1.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.69 59.0 5.05e-01 100.0% 76.8%
3584391 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.68 53.0 4.49e-01 87.3% 50.5%
2605331 4315.1.1.1 beta barrels › Coronavirus NSP8-like › Coronavirus NSP8-like › Coronavirus NSP8-like › CoV_NSP8 0.68 52.0 4.03e-01 85.5% 51.6%
4014196 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.66 47.0 2.75e-01 98.2% 9.0%
4998870 4.1.1.483 beta barrels › SH3 › SH3 › SH3 › RRXRR 0.66 46.0 4.01e-01 90.9% 48.2%
3723061 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 3.96e-01 96.4% 60.7%
3586469 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.62 52.0 4.56e-01 96.4% 68.2%
3284224 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.62 42.0 4.12e-01 70.9% 95.0%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.62 50.0 4.26e-01 92.7% 58.9%
4000622 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.61 50.0 3.94e-01 92.7% 46.7%
4990487 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.61 47.0 4.35e-01 90.9% 65.7%
3503630 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 4.17e-01 100.0% 74.8%
4337890 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.60 45.0 3.05e-01 100.0% 21.4%
5010640 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 52.0 4.48e-01 100.0% 71.1%
3167568 101.46.1.0 alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain 0.60 47.0 3.76e-01 100.0% 40.8%
4464762 2003.1.2.102 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 0.60 52.0 3.19e-01 100.0% 40.0%
4093354 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 45.0 4.26e-01 87.3% 81.4%
3466932 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.58 50.0 3.41e-01 100.0% 54.3%
3715297 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.58 49.0 4.08e-01 94.5% 77.9%
4053572 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.58 49.0 3.74e-01 96.4% 66.9%
4334040 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.58 50.0 3.81e-01 96.4% 69.6%
3908789 4.1.1.354 beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.57 48.0 3.08e-01 96.4% 28.8%
3974308 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 47.0 4.43e-01 94.5% 85.7%
1406655 2.1.1.65 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 0.57 48.0 4.33e-01 100.0% 90.1%
3687406 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 46.0 4.13e-01 100.0% 63.1%
4380937 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 42.0 2.78e-01 85.5% 82.1%
3703208 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 46.0 2.94e-01 92.7% 22.7%
1290375 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.57 44.0 4.14e-01 87.3% 89.7%
142728 5.1.2.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_68 0.56 47.0 2.84e-01 100.0% 78.8%
3386087 2.1.1.65 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 0.55 47.0 4.24e-01 100.0% 91.3%
4984900 2011.2.1.7 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.55 48.0 3.17e-01 100.0% 26.5%
3933166 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.55 45.0 3.41e-01 96.4% 69.0%
3485745 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 41.0 4.09e-01 85.5% 85.0%
5004322 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 46.0 4.01e-01 100.0% 88.9%
4195604 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 44.0 3.40e-01 96.4% 64.4%
3278705 211.1.1.7 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.53 46.0 3.40e-01 100.0% 86.0%
3605540 2.1.1.65 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 0.53 44.0 3.90e-01 100.0% 88.6%
4485519 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 42.0 3.58e-01 100.0% 90.0%
4419838 2003.1.2.133 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FMO-like 0.53 43.0 3.43e-01 96.4% 69.6%
2323851 1196.1.1.0 0.53 41.0 2.70e-01 92.7% 50.9%
4434299 5.1.4.163 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vgb_lyase 0.52 42.0 2.70e-01 92.7% 21.7%
3520903 3864.1.1.0 extended segments › Mitochondrial 54S ribosomal protein L28 › Mitochondrial 54S ribosomal protein L28 › Mitochondrial 54S ribosomal protein L28 0.52 43.0 2.55e-01 96.4% 15.2%
3588456 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.52 43.0 3.19e-01 96.4% 87.1%
2754129 11.1.1.343 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ScpA_C 0.52 42.0 3.59e-01 100.0% 87.4%
3790610 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.51 41.0 3.91e-01 89.1% 92.3%
3724924 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.51 42.0 2.59e-01 98.2% 44.5%
3838442 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.50 40.0 3.47e-01 98.2% 86.0%