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MK291442.1__AZV00282.1__pkon1_p53__00053

Bact-Vir

MK291442.1__AZV00282.1__pkon1_p53__00053

Identity

Accession:
MK291442 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-114
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04383.20 best KilA-N 54.3 1.50e-14 99.0% 88.8%
D2 high residues 177-253
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 5.00e-01 89.6% 85.1%
2jmlA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.61 44.0 4.36e-01 88.3% 72.8%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.61 43.0 4.01e-01 81.8% 58.6%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 45.0 4.48e-01 90.9% 76.8%
5wt3A01 3.30.70.2580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 38.0 4.10e-01 80.5% 76.9%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.98e-01 77.9% 61.9%
2zxqA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 43.0 2.98e-01 80.5% 37.8%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 3.90e-01 77.9% 62.1%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.58 42.0 3.69e-01 80.5% 50.4%
5zi2A02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.58 43.0 3.29e-01 98.7% 32.5%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.14e-01 72.7% 39.0%
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.57 42.0 4.24e-01 79.2% 78.2%
1jqgA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.57 40.0 3.82e-01 85.7% 61.5%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.88e-01 80.5% 63.8%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.83e-01 80.5% 73.6%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.79e-01 81.8% 60.7%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.72e-01 75.3% 61.5%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.29e-01 75.3% 40.8%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.29e-01 76.6% 41.1%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.23e-01 75.3% 37.9%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.94e-01 81.8% 80.0%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.43e-01 81.8% 45.6%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.54 40.0 2.75e-01 77.9% 34.4%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.54 39.0 3.87e-01 77.9% 76.5%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.69e-01 85.7% 61.4%
3aafA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.66e-01 83.1% 86.2%
2lepA00 3.30.70.2350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 4.09e-01 89.6% 93.7%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.21e-01 79.2% 73.3%
4g08A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 41.0 4.26e-01 92.2% 92.9%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.42e-01 76.6% 54.8%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.29e-01 77.9% 44.5%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.53 37.0 4.02e-01 85.7% 98.3%
1vw4700 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.53 36.0 3.32e-01 81.8% 52.8%
4bwxA03 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 36.0 3.59e-01 71.4% 92.5%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.57e-01 76.6% 64.4%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.52 40.0 2.90e-01 83.1% 60.8%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.44e-01 76.6% 56.2%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.45e-01 77.9% 59.0%
4hv0C00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.51 42.0 4.04e-01 92.2% 100.0%
2p5vA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.51 38.0 3.78e-01 89.6% 75.0%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.67e-01 85.7% 72.4%
1ayeA01 3.30.70.340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like 0.51 36.0 3.41e-01 85.7% 59.6%
2efpA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.51 38.0 3.59e-01 89.6% 65.3%
6e4nA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 39.0 4.05e-01 90.9% 94.4%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.50 37.0 3.10e-01 79.2% 55.9%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
169108 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 43.0 3.98e-01 77.9% 61.9%
3468855 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.59 43.0 3.47e-01 76.6% 41.3%
3587826 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 44.0 4.02e-01 81.8% 65.7%
4023885 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.59 42.0 2.45e-01 76.6% 93.4%
3988732 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 42.0 3.87e-01 77.9% 58.3%
5014176 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 42.0 3.41e-01 76.6% 41.9%
4547857 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 49.0 4.85e-01 93.5% 92.5%
4251909 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 42.0 4.13e-01 76.6% 74.1%
5053457 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 43.0 3.36e-01 81.8% 36.4%
5077851 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.58 43.0 3.56e-01 81.8% 47.3%
4945099 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 3.74e-01 81.8% 56.8%
4878879 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 41.0 3.78e-01 76.6% 63.8%
4978424 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 41.0 3.64e-01 77.9% 55.8%
4625648 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 42.0 3.85e-01 81.8% 66.1%
4947503 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.46e-01 81.8% 44.4%
4978596 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 42.0 3.70e-01 81.8% 56.8%
5031662 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 42.0 3.70e-01 81.8% 55.2%
5076521 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.56 40.0 3.44e-01 76.6% 44.6%
4955415 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 40.0 3.65e-01 75.3% 61.0%
4976218 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 42.0 3.70e-01 81.8% 59.2%
3926708 5051.1.1.1 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF 0.56 46.0 2.81e-01 94.8% 74.3%
4998174 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 42.0 3.29e-01 81.8% 69.4%
3278207 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.56 40.0 3.25e-01 76.6% 36.9%
4994660 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.97e-01 87.0% 73.6%
3838156 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.56 40.0 3.60e-01 76.6% 85.5%
5058268 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.56 40.0 3.55e-01 76.6% 53.9%
5052081 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 36.0 2.89e-01 72.7% 30.3%
2583940 601.7.1.8 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas_Csm6_HEPN 0.56 41.0 3.24e-01 80.5% 63.2%
5005295 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.55 46.0 3.90e-01 92.2% 88.5%
5041315 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 41.0 3.86e-01 81.8% 72.0%
4996260 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.55 41.0 3.35e-01 80.5% 76.1%
5017399 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 47.0 3.88e-01 98.7% 60.7%
4961822 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 3.79e-01 75.3% 64.4%
3403298 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 3.64e-01 92.2% 47.6%
3515049 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.55 41.0 3.47e-01 81.8% 78.6%
3676148 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.55 39.0 3.41e-01 75.3% 54.4%
4982781 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.55 41.0 3.73e-01 81.8% 67.3%
3976720 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.55 39.0 4.08e-01 81.8% 81.4%
4940345 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 41.0 3.51e-01 81.8% 52.6%
4959456 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 45.0 3.67e-01 97.4% 55.9%
3688375 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.55 42.0 4.10e-01 97.4% 73.9%
3355197 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 3.68e-01 76.6% 69.0%
4992389 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.93e-01 83.1% 77.9%
4987047 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 41.0 3.61e-01 81.8% 55.8%
4999908 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.54 42.0 4.50e-01 88.3% 100.0%
5049164 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 40.0 3.50e-01 81.8% 53.8%
3180874 604.1.1.57 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF2408 0.54 38.0 3.61e-01 80.5% 62.2%
1888715 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.54 38.0 3.27e-01 76.6% 42.6%
4948272 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.54 39.0 3.84e-01 76.6% 75.9%
3286591 101.1.2.612 alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27059 0.54 35.0 2.89e-01 71.4% 34.2%
4980177 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.54 38.0 3.38e-01 76.6% 51.7%
3285724 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.54 37.0 3.06e-01 71.4% 44.8%
4991742 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 42.0 3.67e-01 90.9% 74.6%
4990701 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 45.0 3.90e-01 98.7% 70.8%
3956796 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.53 41.0 3.24e-01 87.0% 47.0%
3940545 101.1.2.148 alpha arrays › HTH › HTH › winged helix domain › ORC5_C 0.53 40.0 3.35e-01 81.8% 50.0%
4329890 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 37.0 3.03e-01 72.7% 47.3%
4424168 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.53 38.0 3.27e-01 76.6% 43.7%
3439642 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.32e-01 80.5% 48.6%
3280999 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.53 36.0 2.94e-01 70.1% 43.9%
5079768 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.82e-01 80.5% 72.6%
5018467 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.55e-01 76.6% 62.4%
5005002 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.53 37.0 3.12e-01 75.3% 45.5%
4032570 101.1.2.231 alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.52 38.0 3.36e-01 79.2% 58.4%
5033276 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 35.0 2.93e-01 72.7% 35.8%
3950166 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.52 39.0 3.83e-01 83.1% 88.6%
4047911 101.1.2.231 alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.52 38.0 3.33e-01 81.8% 47.7%
5077445 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 3.06e-01 76.6% 43.8%
3362892 101.1.2.113 alpha arrays › HTH › HTH › winged helix domain › RNase_H2-Ydr279 0.52 39.0 3.32e-01 83.1% 66.7%
3456330 101.1.2.516 alpha arrays › HTH › HTH › winged helix domain › PF25895 0.51 42.0 3.56e-01 98.7% 91.0%