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MK291442.1__AZV00295.1__pkon1_p66__00066

Bact-Vir

MK291442.1__AZV00295.1__pkon1_p66__00066

Identity

Accession:
MK291442 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Paracoccus_phage_vB_PkoS_Pkon1

TaxID: 2500568

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-67
PDB
Domain cluster: rep: ON531988.1__UUG68519.1__X__00032__D2-57
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 46.0 4.11e-01 75.8% 57.0%
1iw4A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.61 36.0 3.83e-01 80.3% 67.3%
3s83A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.58 46.0 3.11e-01 87.9% 92.2%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 40.0 3.40e-01 75.8% 57.7%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.56 40.0 3.73e-01 78.8% 70.8%
4hu4A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.54 44.0 3.04e-01 92.4% 92.7%
4e8uA00 3.30.70.2890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › XS domain 0.54 40.0 3.13e-01 84.8% 73.5%
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.54 42.0 3.80e-01 87.9% 84.2%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.54e-01 93.9% 54.1%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 37.0 3.28e-01 77.3% 64.4%
3lzqA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.52 42.0 3.28e-01 93.9% 54.8%
4jg5A01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.22e-01 97.0% 73.7%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.51 40.0 3.18e-01 83.3% 85.2%
1yleA02 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.51 36.0 3.70e-01 77.3% 80.0%
4a42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 34.0 2.87e-01 77.3% 37.0%
2outA01 3.40.5.80 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.51 36.0 3.81e-01 75.8% 87.7%
4ye4H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.41e-01 93.9% 70.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4881923 10.2.1.43 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat_C 0.61 42.0 4.03e-01 77.3% 62.7%
3957374 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.59 42.0 4.18e-01 75.8% 72.9%
4943639 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 41.0 3.88e-01 77.3% 61.2%
1063090 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.58 41.0 3.34e-01 77.3% 56.8%
3242220 11.2.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.57 40.0 3.09e-01 75.8% 86.1%
3186542 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.56 47.0 3.40e-01 100.0% 61.8%
3440667 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.56 40.0 4.11e-01 77.3% 81.5%
3740563 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 40.0 3.54e-01 77.3% 52.6%
3178145 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 39.0 3.02e-01 75.8% 42.0%
4014411 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.54 39.0 3.51e-01 78.8% 56.8%
3647392 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.53 39.0 4.07e-01 77.3% 85.0%
3184485 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.52 45.0 3.89e-01 100.0% 91.7%
4431701 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.52 37.0 3.39e-01 78.8% 57.9%
3739461 1.1.7.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.52 37.0 2.34e-01 77.3% 18.7%
3187684 1.1.7.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.51 36.0 2.94e-01 77.3% 49.0%
142515 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.51 36.0 3.20e-01 77.3% 62.6%
4428249 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 37.0 2.94e-01 77.3% 45.7%
4060146 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 36.0 3.18e-01 77.3% 61.0%
3406278 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 36.0 2.96e-01 77.3% 47.7%
3876565 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.50 41.0 2.99e-01 93.9% 31.2%
3594165 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 36.0 2.74e-01 77.3% 41.8%
D2 high residues 71-125
PDB
Domain cluster: rep: MF431616.1__AYP28107.1__vBLenPICBM2__48__00048__D79-123
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16778.11 best Phage_tail_APC 65.8 3.60e-18 78.2% 70.0%