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MK291443.1__AZV00364.1__psul1_p56__00056

Bact-Vir

MK291443.1__AZV00364.1__psul1_p56__00056

Identity

Accession:
MK291443 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-84
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 61.0 5.63e-01 100.0% 75.3%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.69 49.0 3.75e-01 82.4% 32.6%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 62.0 5.79e-01 100.0% 94.4%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 59.0 5.32e-01 100.0% 75.2%
4xpkA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 46.0 3.78e-01 83.8% 39.0%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 46.0 3.60e-01 82.4% 33.9%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 57.0 5.35e-01 100.0% 87.9%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 57.0 5.34e-01 98.6% 82.2%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 57.0 5.31e-01 100.0% 83.9%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 56.0 5.01e-01 100.0% 70.2%
1wwzA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 44.0 3.53e-01 82.4% 35.0%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 54.0 5.00e-01 98.6% 80.2%
4avaA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 51.0 3.86e-01 100.0% 37.2%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.96e-01 95.9% 79.3%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 5.16e-01 100.0% 91.7%
2kdoA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 41.0 4.04e-01 75.7% 65.0%
4bpe700 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 54.0 4.88e-01 100.0% 74.3%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 51.0 3.79e-01 100.0% 45.1%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.63e-01 100.0% 81.1%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.76e-01 100.0% 76.6%
5optn00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 52.0 4.81e-01 98.6% 86.0%
4nzrM03 3.30.110.180 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.59 44.0 3.87e-01 85.1% 62.6%
3v8vA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.58 45.0 3.38e-01 89.2% 90.1%
2j0nB00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.57 49.0 3.77e-01 100.0% 84.5%
3r4cA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 44.0 4.00e-01 83.8% 93.1%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 36.0 3.67e-01 70.3% 63.5%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 49.0 4.08e-01 100.0% 57.9%
2p5vA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.57 39.0 3.78e-01 71.6% 67.9%
3dmgA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 41.0 3.09e-01 87.8% 29.4%
3qdhA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 3.87e-01 97.3% 46.8%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 48.0 4.41e-01 100.0% 76.7%
4i0wA00 3.30.70.2980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 45.0 4.24e-01 90.5% 78.3%
3n89A02 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.55 42.0 3.50e-01 83.8% 94.9%
2fgcA03 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.55 36.0 3.64e-01 75.7% 65.8%
1ybtB00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 38.0 2.94e-01 73.0% 79.1%
1ibaA00 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.54 47.0 4.65e-01 100.0% 94.9%
4igbB02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 46.0 3.76e-01 95.9% 65.0%
6nuiA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 40.0 3.03e-01 79.7% 35.8%
3oreA01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 36.0 3.77e-01 70.3% 87.9%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 36.0 3.28e-01 71.6% 53.8%
1hi9A02 3.30.1360.130 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Dipeptide transport protein 0.53 39.0 3.94e-01 94.6% 80.3%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.52 43.0 3.81e-01 91.9% 79.6%
2zzzA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.52 38.0 4.16e-01 83.8% 96.7%
1ufwA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 35.0 3.33e-01 73.0% 70.5%
2qyxB01 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.51 36.0 3.21e-01 74.3% 67.9%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 32.0 3.19e-01 74.3% 57.3%
7e6gA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.50 34.0 2.80e-01 70.3% 45.6%
4aimA03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.50 34.0 3.53e-01 71.6% 84.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4004341 101.1.2.775 alpha arrays › HTH › HTH › winged helix domain › SieB 0.71 60.0 5.73e-01 100.0% 81.2%
4418841 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.70 47.0 4.23e-01 83.8% 49.5%
5024398 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 63.0 5.13e-01 100.0% 62.3%
3282605 101.1.2.508 alpha arrays › HTH › HTH › winged helix domain › PF25872 0.63 54.0 5.32e-01 100.0% 88.7%
1877636 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.63 53.0 4.09e-01 100.0% 40.2%
3099741 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.62 54.0 4.95e-01 98.6% 80.8%
4948120 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 54.0 5.09e-01 98.6% 87.8%
4038616 3110.1.1.10 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › PF30401 0.61 41.0 3.57e-01 81.1% 45.1%
5053493 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 49.0 3.87e-01 93.2% 41.9%
4958791 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.60 35.0 3.77e-01 82.4% 68.3%
4948011 304.28.1.38 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › CAA_C 0.60 47.0 3.56e-01 86.5% 49.7%
3676148 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.60 52.0 4.44e-01 100.0% 68.0%
4945179 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 51.0 4.16e-01 100.0% 66.9%
5025092 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.58 38.0 3.88e-01 82.4% 68.0%
4949130 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.57 34.0 3.55e-01 79.7% 64.6%
5044711 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.56 37.0 3.75e-01 70.3% 66.7%
4858172 3517.1.1.2 a+b complex topology › Polymerase acidic protein › Polymerase acidic protein › Polymerase acidic protein › Bunya_RdRp 0.55 46.0 3.27e-01 97.3% 35.8%
3205361 310.1.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain 0.55 48.0 3.98e-01 100.0% 78.5%
5066641 2003.1.2.40 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_oxidored 0.54 45.0 2.88e-01 97.3% 24.3%
4089149 304.8.1.24 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF2129 0.54 34.0 3.40e-01 70.3% 61.3%
4931083 304.147.1.0 a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain 0.53 31.0 3.34e-01 82.4% 68.3%
3231406 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.92e-01 93.2% 97.3%
4941613 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.52 38.0 3.55e-01 79.7% 87.0%
D2 high residues 90-140
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.76 68.0 5.90e-01 100.0% 75.0%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.70 57.0 5.79e-01 100.0% 94.0%
2aehA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 52.0 4.33e-01 92.2% 92.7%
5aq0B00 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.64 44.0 3.77e-01 98.0% 45.1%
2hpuA01 3.30.70.2060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 46.0 4.36e-01 100.0% 65.1%
2wxfA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 52.0 4.09e-01 100.0% 65.5%
2je8A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 51.0 3.56e-01 100.0% 30.2%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.60 47.0 4.27e-01 100.0% 78.0%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.60 51.0 4.28e-01 100.0% 60.2%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 3.56e-01 100.0% 40.2%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 46.0 4.46e-01 100.0% 78.7%
6a48A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 45.0 3.34e-01 100.0% 33.8%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 3.70e-01 100.0% 45.5%
2gl5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 43.0 3.37e-01 96.1% 80.5%
4lr4A02 2.60.120.1430 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.01e-01 100.0% 26.8%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.54 44.0 3.86e-01 100.0% 89.8%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 44.0 3.94e-01 100.0% 89.9%
2yweA04 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 46.0 3.59e-01 100.0% 93.9%
3sz6A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.28e-01 94.1% 91.4%
3zn4A00 2.60.120.1180 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 3.03e-01 100.0% 47.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.81 69.0 7.05e-01 100.0% 94.0%
3249515 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 62.0 5.95e-01 98.0% 100.0%
4583560 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 55.0 5.77e-01 98.0% 100.0%
4231372 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.65 57.0 5.15e-01 100.0% 95.7%
4364088 3115.4.1.0 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.64 50.0 5.18e-01 94.1% 100.0%
4147528 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.63 56.0 5.04e-01 100.0% 97.1%
3959440 4.1.1.180 beta barrels › SH3 › SH3 › SH3 › DUF3107 0.63 56.0 5.22e-01 100.0% 96.9%
2905139 4187.1.1.2 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL 0.62 54.0 5.19e-01 100.0% 86.2%
3400462 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.62 45.0 4.37e-01 100.0% 70.7%
3388528 7056.1.1.0 few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan 0.62 44.0 4.81e-01 100.0% 97.5%
3467170 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.61 53.0 4.98e-01 100.0% 81.0%
3282305 4187.1.1.0 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like 0.59 47.0 4.28e-01 100.0% 65.7%
3672413 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 3.72e-01 86.3% 86.7%
5017559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.32e-01 98.0% 98.5%
4810265 221.1.1.8 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd 0.55 41.0 3.86e-01 94.1% 66.7%
3577630 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.54 45.0 3.46e-01 98.0% 41.5%
3712786 3346.1.1.0 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 0.53 47.0 3.25e-01 100.0% 32.0%
3779466 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.50 40.0 2.45e-01 100.0% 12.7%