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MK291445.1__AZV00428.1__pyei1_p11__00011

Bact-Vir

MK291445.1__AZV00428.1__pyei1_p11__00011

Identity

Accession:
MK291445 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Paracoccus_phage_vB_PyeM_Pyei1

TaxID: 2500566

Cluster

View cluster (23 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-57_129-149
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.86 76.0 5.79e-01 93.9% 96.4%
1dfaA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.85 75.0 5.17e-01 93.9% 98.5%
1mi8A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.83 74.0 5.67e-01 97.0% 96.5%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.81 72.0 5.50e-01 97.0% 97.9%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.76 68.0 5.30e-01 100.0% 99.3%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.71 60.0 4.52e-01 97.0% 98.2%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 4.82e-01 74.2% 95.5%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 40.0 3.88e-01 80.3% 85.3%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.50 41.0 3.76e-01 90.9% 73.3%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3690149 69.1.1.5 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Vint 0.92 87.0 6.17e-01 100.0% 78.2%
3174953 69.1.1.2 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.89 78.0 5.16e-01 92.4% 98.7%
3257888 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.87 79.0 5.86e-01 97.0% 98.0%
259963 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.86 76.0 5.79e-01 93.9% 96.4%
4274856 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 75.0 5.40e-01 92.4% 97.0%
3963364 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.84 76.0 5.72e-01 97.0% 97.9%
4994372 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 72.0 5.73e-01 90.9% 98.3%
3952464 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.81 74.0 5.64e-01 100.0% 95.2%
3282306 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.81 68.0 5.36e-01 92.4% 97.0%
4180552 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 71.0 5.23e-01 97.0% 98.2%
3861422 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.80 73.0 5.14e-01 100.0% 82.1%
4457379 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 71.0 5.44e-01 98.5% 93.1%
2636473 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.76 62.0 4.68e-01 86.4% 44.8%
4997604 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.75 67.0 4.95e-01 100.0% 95.9%
4291841 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.74 62.0 4.61e-01 92.4% 99.4%
4170121 69.1.1.11 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT, Intein_splicing 0.73 63.0 4.69e-01 97.0% 97.6%
4416649 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.72 59.0 4.45e-01 86.4% 55.9%
3602168 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.72 64.0 4.84e-01 100.0% 98.1%
3603291 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.71 62.0 4.62e-01 100.0% 96.0%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 50.0 5.07e-01 72.7% 95.4%
1758564 69.1.1.2 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.65 57.0 4.08e-01 92.4% 37.9%
3904402 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.46e-01 93.9% 74.4%
3948150 3174.3.1.1 ↗ beta barrels › Ribosomal protein L14-like › PAAR-repeat protein › PAAR-repeat protein › PAAR_motif 0.55 42.0 4.02e-01 84.8% 93.8%
2674741 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.53 36.0 3.91e-01 72.7% 100.0%
4958669 4027.1.1.0 ↗ beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit 0.52 31.0 3.49e-01 86.4% 84.4%
D2 medium residues 58-128_150-166
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.55 30.0 3.73e-01 94.3% 100.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023539 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.69 49.0 4.03e-01 73.9% 44.5%
3557903 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.51 35.0 3.41e-01 70.5% 66.3%
3519457 1.1.2.19 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.50 34.0 3.38e-01 70.5% 69.5%