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MK291445.1AZV00448.1pyei1_p31__00031

Bact-Vir

MK291445.1__AZV00448.1__pyei1_p31__00031

Identity

Accession:: MK291445 ↗
Kingdom:: phage

Quality

83.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Paracoccus_phage_vB_PyeM_Pyei1

TaxID: 2500566

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-92_158-192

PDB

Domain cluster: rep: NC_010393.1__YP_001700681.1__STM1036.Gifsy2__00038__D6-86_149-187

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1wg1A01	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.66	35.0	4.39e-01	93.6%	87.3%
2ja9A02	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.65	35.0	4.15e-01	86.4%	77.4%
1tuaA01	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.63	37.0	4.29e-01	92.0%	84.5%
2anrA02	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.63	35.0	4.32e-01	88.8%	90.7%
3en9A03	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.60	31.0	3.85e-01	80.8%	82.2%
2lyiA01	1.10.274.60	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain	0.58	51.0	4.80e-01	96.0%	83.1%
4g59B00	3.30.500.10	Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like	0.56	40.0	3.68e-01	73.6%	100.0%
1eq1A00	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.55	48.0	4.46e-01	98.4%	93.4%
5dvwA00	1.20.120.1160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.54	36.0	3.60e-01	92.8%	65.2%
5ucdA01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.53	43.0	3.54e-01	86.4%	67.2%
4c3sA01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.53	43.0	3.51e-01	89.6%	59.4%
2wqlA00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.52	46.0	4.32e-01	96.8%	98.0%
1sziA02	1.20.120.340	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS	0.51	37.0	3.67e-01	77.6%	79.6%
1z1vA00	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.50	29.0	3.64e-01	84.8%	100.0%
1t90A01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.50	40.0	3.20e-01	88.0%	53.2%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4976045	304.57.1.1 ↗	a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14	0.65	41.0	4.38e-01	89.6%	71.8%
3289514	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.60	49.0	3.83e-01	87.2%	91.5%
5035991	3567.1.1.112 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › AI-2E_transport	0.60	46.0	4.27e-01	80.8%	64.4%
4196666	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.58	43.0	3.60e-01	76.8%	83.3%
5059008	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.57	41.0	4.26e-01	80.8%	79.2%
3946332	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.54	42.0	3.08e-01	81.6%	80.0%
3965195	7524.1.1.1 ↗	a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh	0.53	41.0	3.45e-01	83.2%	65.0%
4002132	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.52	39.0	2.99e-01	80.8%	88.0%
3202208	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.52	41.0	3.88e-01	84.0%	76.7%
3374880	3758.1.1.0 ↗	alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins	0.51	43.0	3.39e-01	88.0%	80.4%

D2 high residues 93-155

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1y14D02	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.50	41.0	3.80e-01	98.4%	96.6%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4995271	2.10.1.1 ↗	beta barrels › OB-fold › CheW › CheW › CheW	0.55	37.0	3.18e-01	100.0%	40.0%
3939998	206.1.3.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp	0.53	36.0	2.45e-01	71.4%	42.0%
4945330	4294.1.1.11 ↗	few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › ResIII	0.51	34.0	3.36e-01	100.0%	62.9%