Back to structures

MK291445.1__AZV00487.1__pyei1_p70__00070

Bact-Vir

MK291445.1__AZV00487.1__pyei1_p70__00070

Identity

Accession:
MK291445 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-59
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.83 74.0 5.55e-01 100.0% 87.1%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 58.0 6.00e-01 87.9% 79.6%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.75 56.0 5.50e-01 89.7% 73.0%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.75 41.0 3.33e-01 87.9% 29.4%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.73 63.0 5.06e-01 100.0% 90.8%
3rklA00 6.10.140.1640 Special › Helix non-globular › Helix Hairpins › 0.72 63.0 5.72e-01 100.0% 87.5%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 39.0 3.90e-01 94.8% 51.7%
6guvA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.68 46.0 3.53e-01 82.8% 30.6%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.68 55.0 4.82e-01 91.4% 97.8%
3k6tB00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 46.0 4.81e-01 96.6% 85.7%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 56.0 3.89e-01 98.3% 58.6%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.64 47.0 3.71e-01 81.0% 71.1%
7dd9A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.64 44.0 2.91e-01 74.1% 100.0%
1ni5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.62 41.0 3.62e-01 100.0% 46.5%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.62 53.0 3.80e-01 100.0% 82.3%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.62 44.0 3.15e-01 79.3% 100.0%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 54.0 4.46e-01 100.0% 86.0%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.61 53.0 4.52e-01 100.0% 75.5%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.60 40.0 3.83e-01 94.8% 57.7%
4abyD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 45.0 2.85e-01 81.0% 29.3%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 44.0 4.08e-01 100.0% 62.2%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.59 48.0 4.56e-01 89.7% 100.0%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.58 48.0 4.70e-01 93.1% 85.7%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 48.0 3.63e-01 100.0% 94.5%
1xlyA00 1.20.200.20 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › She2 domain 0.58 41.0 2.77e-01 74.1% 28.1%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.58 41.0 2.78e-01 74.1% 61.7%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.57 49.0 3.49e-01 100.0% 65.6%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.57 45.0 3.97e-01 89.7% 58.8%
6gpxB00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.57 47.0 3.07e-01 94.8% 25.9%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 32.0 3.20e-01 93.1% 50.0%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.56 50.0 3.80e-01 100.0% 78.4%
1k0eB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.56 47.0 2.87e-01 100.0% 72.2%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 43.0 3.63e-01 89.7% 93.4%
2p6rA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 3.25e-01 98.3% 90.8%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.55 39.0 2.51e-01 75.9% 20.5%
4blpB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 44.0 2.97e-01 94.8% 70.4%
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 3.85e-01 91.4% 72.4%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.54 48.0 3.68e-01 100.0% 79.5%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 46.0 3.15e-01 100.0% 31.4%
1kf6D00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.53 38.0 3.12e-01 91.4% 38.7%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 43.0 3.59e-01 93.1% 90.8%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 37.0 2.41e-01 93.1% 13.6%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 45.0 2.81e-01 100.0% 92.5%
7oode01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 43.0 4.16e-01 100.0% 83.8%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 38.0 3.11e-01 82.8% 68.1%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 42.0 3.78e-01 98.3% 66.7%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4378 4359.1.1.1 alpha duplicates or obligate multimers › YfbU-like, N-terminal subdomain › YfbU-like, N-terminal subdomain › YfbU-like, N-terminal subdomain › YfbU 0.87 58.0 5.97e-01 93.1% 72.7%
3720364 109.26.1.1 alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C 0.86 59.0 3.35e-01 70.7% 10.3%
3739944 109.4.1.570 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps8 0.84 62.0 3.42e-01 79.3% 7.2%
5006936 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.82 57.0 5.46e-01 89.7% 64.6%
4964626 101.1.2.931 alpha arrays › HTH › HTH › winged helix domain › DUF7528 0.76 53.0 4.06e-01 74.1% 40.8%
3714425 109.4.1.210 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.72 56.0 4.44e-01 84.5% 43.5%
4990927 10.28.1.1 beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 0.71 62.0 4.75e-01 94.8% 64.0%
3625485 109.6.1.0 alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF 0.71 56.0 3.98e-01 86.2% 51.8%
5075725 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 45.0 3.35e-01 89.7% 26.9%
4214812 4.8.1.26 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › bPH_8 0.66 57.0 5.01e-01 100.0% 89.8%
None 0.65 46.0 2.94e-01 74.1% 16.2%
4828520 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.65 56.0 4.53e-01 96.6% 51.9%
3896583 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.65 48.0 3.46e-01 87.9% 26.9%
None 0.64 47.0 2.98e-01 79.3% 60.6%
4648433 4.8.1.26 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › bPH_8 0.64 54.0 4.88e-01 100.0% 94.1%
4992470 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.63 42.0 4.25e-01 70.7% 70.0%
4025745 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 43.0 2.49e-01 75.9% 6.7%
3589473 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 52.0 4.78e-01 100.0% 88.7%
4034423 4.8.1.26 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › bPH_8 0.62 52.0 4.69e-01 98.3% 96.5%
5001620 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.62 49.0 4.13e-01 91.4% 51.4%
4635176 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.62 45.0 3.57e-01 81.0% 85.4%
4995140 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.61 49.0 3.69e-01 89.7% 86.9%
4061485 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.60 45.0 3.18e-01 79.3% 36.6%
3286555 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 3.63e-01 81.0% 60.0%
4605149 3567.1.1.90 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PFF1_TM 0.60 48.0 3.55e-01 91.4% 63.7%
4029951 220.1.1.310 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29397, PF29398 0.59 50.0 3.85e-01 100.0% 40.0%
3789757 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 42.0 2.62e-01 77.6% 67.7%
4950368 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 46.0 3.52e-01 93.1% 43.9%
3604599 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.58 42.0 3.61e-01 79.3% 50.0%
3993394 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 40.0 2.66e-01 77.6% 64.2%
5022340 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 4.70e-01 100.0% 98.6%
5061503 220.1.1.290 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_5 0.57 49.0 4.10e-01 100.0% 87.6%
4380028 220.1.1.291 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_4 0.57 49.0 4.46e-01 100.0% 88.7%
5040325 220.1.1.290 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_5 0.57 48.0 4.08e-01 100.0% 91.3%
4933961 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 49.0 2.99e-01 100.0% 21.3%
3707372 7039.1.1.0 a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM 0.56 47.0 3.17e-01 100.0% 24.2%
3615326 7039.1.1.0 a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM 0.56 46.0 3.10e-01 100.0% 21.9%
3289995 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 3.99e-01 100.0% 72.7%
5013223 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.56 49.0 3.38e-01 100.0% 55.6%
3481680 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 3.89e-01 100.0% 66.1%
4567535 1203.1.2.0 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 0.56 45.0 2.91e-01 93.1% 93.0%
4934281 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 48.0 3.66e-01 100.0% 82.6%
4943798 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.55 48.0 3.28e-01 100.0% 55.9%
81576 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.55 47.0 3.08e-01 100.0% 29.5%
5066347 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 48.0 3.60e-01 100.0% 72.0%
4934385 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.55 48.0 3.38e-01 100.0% 56.8%
5049640 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 4.21e-01 100.0% 88.6%
4454944 101.1.2.468 alpha arrays › HTH › HTH › winged helix domain › McbB 0.54 40.0 3.63e-01 79.3% 85.0%
3211768 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 46.0 3.86e-01 100.0% 65.7%
5009772 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.54 45.0 3.14e-01 100.0% 54.1%
4934194 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.54 44.0 3.14e-01 96.6% 69.0%
3164152 4337.1.1.0 a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.53 42.0 3.78e-01 89.7% 89.4%
4098275 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 44.0 3.99e-01 98.3% 67.5%
3931230 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 38.0 3.71e-01 87.9% 69.2%
4928066 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 45.0 3.30e-01 100.0% 65.2%
5077089 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 4.33e-01 100.0% 95.7%
4566910 4337.1.1.0 a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.53 41.0 3.65e-01 89.7% 86.7%
3985978 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 45.0 3.96e-01 96.6% 75.6%
3838921 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.52 43.0 3.90e-01 98.3% 67.5%
4422597 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 40.0 2.65e-01 93.1% 78.8%
4992898 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.52 45.0 2.92e-01 100.0% 54.1%
3726987 7590.1.1.7 a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.52 44.0 3.05e-01 100.0% 42.6%
4998413 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 4.25e-01 100.0% 94.3%
3780673 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 41.0 2.84e-01 94.8% 44.2%
4132106 4337.1.1.0 a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.51 41.0 3.76e-01 91.4% 91.3%
3949336 220.1.1.216 beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.51 44.0 3.61e-01 100.0% 61.8%
4027872 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 3.79e-01 100.0% 67.4%