←Back to structures
MK295205.1__AZV01485.1__vBSflM004_096__00096
Bact-VirMK295205.1__AZV01485.1__vBSflM004_096__00096
Identity
- Accession:
- MK295205 ↗
- Kingdom:
- phage
Quality
85.6
mean pLDDT
Taxonomy
TaxID: 2500763
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-46
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qmeA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.53 | 39.0 | 3.23e-01 | 87.0% | 52.1% |
| 2xnjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 41.0 | 3.32e-01 | 100.0% | 79.8% |
D2
medium
residues 47-105
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03864.23 best | Phage_cap_E | 40.2 | 3.20e-10 | 100.0% | 16.8% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1whnA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 33.0 | 2.76e-01 | 71.2% | 27.7% |
| 7b1cD01 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.57 | 39.0 | 3.50e-01 | 96.6% | 48.9% |
| 2znhA03 | 6.20.40.10 | Special › Other non-globular › Porin MspA ribbon fold › | 0.57 | 35.0 | 3.71e-01 | 84.7% | 74.5% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.56 | 36.0 | 3.11e-01 | 86.4% | 37.3% |
| 2ednA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.02e-01 | 74.6% | 79.7% |
| 3h95A02 | 4.10.80.100 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.52 | 25.0 | 3.26e-01 | 83.1% | 76.7% |
| 1neiA00 | 3.30.160.220 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG | 0.51 | 27.0 | 2.72e-01 | 72.9% | 41.7% |
| 2xzmJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.51 | 39.0 | 3.33e-01 | 100.0% | 48.6% |
| 1pqzA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 3.02e-01 | 74.6% | 63.4% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.50 | 35.0 | 2.61e-01 | 74.6% | 96.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5065403 | 2487.1.1.9 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cyclase | 0.69 | 38.0 | 2.50e-01 | 71.2% | 13.2% |
| 1553361 | 2.1.1.5 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17,Ribosomal_S17_N | 0.64 | 35.0 | 3.12e-01 | 74.6% | 36.5% |
| 4156749 | 3234.1.1.2 ↗ | a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N | 0.63 | 35.0 | 2.21e-01 | 78.0% | 10.5% |
| 3534592 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 40.0 | 4.12e-01 | 88.1% | 69.1% |
| 4196939 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.58 | 44.0 | 4.01e-01 | 100.0% | 61.3% |
| 4238490 | 812.2.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase | 0.58 | 33.0 | 3.28e-01 | 81.4% | 49.2% |
| 3410701 | 11.1.1.1063 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3, DB, Ig_3 | 0.56 | 37.0 | 2.11e-01 | 71.2% | 10.2% |
| 4085638 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.55 | 35.0 | 3.00e-01 | 86.4% | 35.6% |
| 3593809 | 304.31.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase | 0.54 | 35.0 | 2.86e-01 | 78.0% | 35.5% |
| 3169095 | 2.1.1.4 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 | 0.52 | 31.0 | 2.76e-01 | 76.3% | 37.6% |
| 3675789 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 36.0 | 3.45e-01 | 74.6% | 84.3% |
| 3672794 | 207.1.1.67 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6 | 0.50 | 41.0 | 2.38e-01 | 89.8% | 24.0% |